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RNA-seq data of intestinal epithelial cells and lamina propria dendritic cells

GSE101678 Mus musculus Expression profiling by high throughput sequencing 44 samples Submitted 2017/10/20 Platform GPL18480
Summary
We report that Klebsiella pneumoniae promote Th1 cell induction in colon. To examine the influence of Klebsiella on colonic epithelial cells (ECs) and lamina propria CD11c+ dendritic cells (DCs), we performed RNA seq on them. Germ free mice were orally inoculated with Kp-2H7 or BAA-2552 and total RNA was isolated from colonic ECs and DCs 1 week after inoculation. Furthermore, we examined the involvement of TLRs in induction of Th1 cells using Myd88 KO, Trif KO, Myd88/Trif DKO mice. These deficient germ free mice were orally inoculated with Kp-2H7 and total RNA was isolated from colonic ECs 3 weeks after inoculation.
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Also filed as BioProject PRJNA395175 and SRA study SRP113200. Searching any of these in the dataset finder brings you back here.

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