N6-methyladenosine RNA modification regulates embryonic neural stem cell self-renewal through histone modifications.
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 35 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 35 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE104686_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA413499 and SRA study SRP119514. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 35 more — browse all 35 samples with per-sample file links →
- GSE263059 Addressing the specific roles of histone modifications in transcriptional repression [ChIP-seq and CUT&RUN] 111 samples shares modifications, modification, histone
- GSE263060 Addressing the specific roles of histone modifications in transcriptional repression [RNA-seq] 105 samples shares modifications, modification, histone
- GSE254806 Differential genome-wide profile of histone modifications upon treatment with gamma-secretase inibithor (GSI) DAPT [ChIP-seq] 57 samples shares modifications, modification, histone
- GSE235109 Ensembles of genome-coverage single-cell histone modifications reveal epigenetic lineages during mouse preimplantation development 47 samples shares modifications, modification, histone
- GSE196745 Changes in Ikaros binding and histone-modifications upon oncogenic β-catenin activation [ChIP-Seq] 30 samples shares modifications, modification, histone
- GSE259393 Ensembles of genome-coverage single-cell histone modifications reveal epigenetic lineages during mouse preimplantation development II 27 samples shares modifications, modification, histone
- GSE266077 Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for the histone modifications H3K27ac and H3K9me3 in liver tissues from MCD and regular chow diet mice 18 samples shares modifications, modification, histone
- GSE285248 Deciphering the role of histone modifications in memory and exhausted CD8 T cells [RNA-seq] 16 samples shares modifications, modification, histone
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.