A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
Expression microarray · human · 546 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 546 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE11907_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA105749. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 546 more — browse all 546 samples with per-sample file links →
- GSE254176 Dynamic changes of immune cells in systemic lupus erythematosus with nephritis using longitudinal peripheral blood single-cell RNA-seq 57 samples shares erythematosus, systemic, blood, lupus
- GSE224198 Single-cell multi-omics analysis revealing immune features of inactivated SARS-CoV-2 vaccination in systemic lupus erythematosus patients 26 samples shares erythematosus, systemic, lupus
- GSE250025 Impaired innate and adaptive immune responses to BNT162b2 SARS-CoV-2 vaccination in systemic lupus erythematosus 84 samples shares erythematosus, systemic, lupus
- GSE250023 Impaired innate and adaptive immune responses to BNT162b2 SARS-CoV-2 vaccination in systemic lupus erythematosus 75 samples shares erythematosus, systemic, lupus
- GSE226147 Modeling of Clinical Phenotypes in Systemic Lupus Erythematosus Based on the Platelet Transcriptome and FCGR2a Genotype 69 samples shares erythematosus, systemic, lupus
- GSE249619 Divergent Epigenetic and Transcriptomic Remodelling during Monocyte Subset Differentiation in Systemic Lupus Erythematosus [RNA-seq] 57 samples shares erythematosus, systemic, lupus
- GSE294789 Daratumumab in systemic lupus erythematosus: a phase 2 trial 56 samples shares erythematosus, systemic, lupus
- GSE278120 Interferon activation in bone marrow long-lived plasma cells in systemic lupus erythematosus 48 samples shares erythematosus, systemic, lupus
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.