miRNA profiles of HCC from Southeast China
Non-coding RNA profiling · mouse · 16 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 16 samples: 8 conditions, mostly in duplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE12717_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
Also filed as BioProject PRJNA112655. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 8 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM319221 HCC_SampleT1_rep1 HCC_SampleT1
- GSM319222 HCC_SampleT1_rep2 HCC_SampleT1
- GSM319223 HCC_SampleT2_rep1 HCC_SampleT2
- GSM319228 HCC_SampleT2_rep2 HCC_SampleT2
- GSM319229 HCC_SampleT3_rep1 HCC_SampleT3
- GSM319231 HCC_SampleT3_rep2 HCC_SampleT3
- GSM319234 HCC_SampleT4_rep1 HCC_SampleT4
- GSM319235 HCC_SampleT4_rep2 HCC_SampleT4
- GSM319237 HCC_SampleT5_rep1 HCC_SampleT5
- GSM319239 HCC_SampleT5_rep2 HCC_SampleT5
- GSM319241 Liver_SampleN1_rep1 Liver_SampleN1
- GSM319242 Liver_SampleN1_rep2 Liver_SampleN1
- GSM319244 Liver_SampleN2_rep1 Liver_SampleN2
- GSM319245 Liver_SampleN2_rep2 Liver_SampleN2
- GSM319247 Liver_SampleN3_rep2 Liver_SampleN3
- GSM319248 Liver_SampleN3_rep1 Liver_SampleN3
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.