CARM1 is an integral component of the NuRD chromatin remodeling complex
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 15 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 15 samples: 12 distinct titles, 3 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE131865_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA545138 and SRA study SRP199671. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 15 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM3822337 ChIP-Seq_HEK293T_3__HA_CARM1_rep1
- GSM3822338 ChIP-Seq_HEK293T_3__HA_CARM1_rep2
- GSM3822339 ChIP-Seq_HEK293T_HDAC2
- GSM3822340 ChIP-Seq_HEK293T_KDM1A
- GSM3822341 ChIP-Seq_HEK293T_3__HA_GATAD2A_WT
- GSM3822342 ChIP-Seq_HEK293T_3__HA_GATAD2A_7R/K
- GSM3822343 RNA-Seq_HEK293T_siCTL_rep1
- GSM3822344 RNA-Seq_HEK293T_siCARM1_rep1
- GSM3822345 RNA-Seq_HEK293T_siCTL_rep2
- GSM3822346 RNA-Seq_HEK293T_siCARM1_rep2
- GSM3822347 RNA-Seq_HEK293T_siGATAD2A
- GSM3822348 RNA-Seq_HEK293T_siCHD4
- GSM3822349 RNA-Seq_HEK293T_siKDM1A
- GSM3822350 RNA-Seq_HEK293T_siHDAC2
- GSM3938802 ChIP-Seq_HEK293T_CHD4
- GSE215328 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [hESC_H9_d049_ChIP_Seq] 135 samples shares remodeling, chromatin, complex, nurd
- GSE253694 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [HEK293T_siNURD_CTCF_ChIP_Seq] 36 samples shares remodeling, chromatin, complex, nurd
- GSE215326 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [HEK293T_IAA72h_ChIP_Seq] 30 samples shares remodeling, chromatin, complex, nurd
- GSE311392 The NuRD chromatin remodeling complex regulates tRNA genes through direct interactions with RNA polymerase III [Nuclei run-on (nascent RNA) profiling] 6 samples shares remodeling, chromatin, complex, nurd
- GSE236639 ZNF512B binds RBBP4 via a variant NuRD interaction motif and aggregates chromatin in a NuRD complex-independent manner 13 samples shares chromatin, complex, nurd
- GSE314155 BRD9 Reads Lactate-Induced H3K18 Lactylation to Drive Oncogenic Chromatin Remodeling in Hepatocellular Carcinoma 17 samples shares remodeling, chromatin
- GSE243299 3D Chromatin Remodeling in B-cell Development and B-cell Acute Lymphoblastic Leukemia 112 samples shares remodeling, chromatin
- GSE243298 3D Chromatin Remodeling in B-cell Development and B-cell Acute Lymphoblastic Leukemia [Hi-C] 35 samples shares remodeling, chromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.