Molecular profiling of breast cancer cell lines defines relevant tumor models
Expression microarray · human · 105 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- Breast cancerThis series is part of our curated briefing on it.
- Samples
- 105 samples: 101 distinct titles, 4 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE15376_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA117105. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 105 sample titles: 101 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM350499 1954|Shez193s
- GSM350500 SHFY72|HCC70
- GSM350501 shdv117_sr|SKBR3 vs. NF|
- GSM350502 shfy112|MDA468
- GSM350503 1569|Shez182s
- GSM350504 shdv118_sr|BT474 vs. NF|
- GSM350505 shfk146|BT-20 vs. NF|
- GSM350506 shei191_sr|NM vs. NF|
- GSM350507 SHFY67|HCC3153
- GSM350508 shei109_sr|ZR751 vs. NF|
- GSM350509 shei189_sr|H55785 vs. NF|
- GSM350510 Shfc215|HCC1428
- GSM350511 shdv145_sr|MDA MB 175 VII vs. NF|
- GSM350512 SHFY62|HCC712
- GSM350513 shfk234|NM vs. NF|
- GSM350514 Shgu155|T47DvsXX
- GSM350515 202|Shez207s
- GSM350516 shei175_sr|UACC812 vs. NF|
- GSM350517 shgu152|BT549vsXX
- GSM350518 1007|Shez206s
- GSM350519 Shfc168|HCC2185
- GSM350520 Shfc124|HCC2218
- GSM350521 shgu181|CAL51vs XX
- GSM350522 shgu183|184A1 vs XX
- GSM350523 shfy110|MDA134
- GSM350524 Shgu157|SUM52vsXX
- GSM350525 Shfc166|HCC2157
- GSM350526 Shfc143|HCC1599
- GSM350527 shei154_sr|EFM19 vs. NF|
- GSM350528 Shfc139|HCC1806
- GSM350529 shei177_sr|UACC893 vs. NF|
- GSM350530 shfk253_sr|MDA453 vs. NF|
- GSM350531 Shgu156|SUM44vsXX
- GSM350532 shei156_sr|EFM192A vs. NF|
- GSM350533 shei174_sr|ZR7530 vs. NF|
- GSM350534 shfk169|SUM190 vs. NF|
- GSM350535 shei83|NM vs. NF|
- GSM350536 38|Shez192s
- GSM350537 Shgu158|SUM102vsXX
- GSM350538 Shfc194|HCC1500
+ 65 more — browse all 105 samples with per-sample file links →
- GSE10886 A Supervised Risk Predictor of Breast Cancer Based on Biological Subtypes 226 samples same disease briefing · shares breast
- GSE11121 The humoral immune system has a key prognostic impact in node-negative breast cancer 200 samples same disease briefing · shares breast
- GSE104193 Hypoxia-mediated translational activation of ITGB3 in breast cancer cells enhances TGF-β signalling and malignant features in vitro and in vivo 32 samples same disease briefing · shares breast
- GSE104675 Role for the Transcriptional Activator ZRF1 in Breast Cancer Progression and Endocrine Resistance 6 samples same disease briefing · shares breast
- GSE10885 An integromic analysis reveals that metaplastic carcinomas are distinct from basal-like tumors. 244 samples same disease briefing
- GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples shares breast
- GSE309004 Molecular determinants of neoadjuvant chemotherapy resistance in breast cancer: An analysis of gene expression and tumor microenvironment 54 samples shares breast
- GSE325047 Pervasive Enhanced Transcription in Inflammatory Breast Cancer Tumors and PBMCs Impacts RNA Splicing and Intronic RNAs in Plasma 80 samples shares breast
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.