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EORTC 10994 clinical trial

GSE1561 Homo sapiens Expression profiling by array 49 samples Submitted 2005/06/01 Platform GPL96
Summary
EORTC 10994 is a phase III clinical trial comparing FEC with ET in patients with large operable, locally advanced or inflammatory breast cancer (www.eortc.be). Frozen biopsies were taken at randomisation. RNA was extracted from 100um thickness of 14G core needle biopsies. Adjacent sections were tested by H&E to confirm >20% tumour cell content. 100 ng total RNA per chip were amplified using the Affymetrix small sample protocol (IVT then Enzo). 49 tumours were tested on Affymetrix U133A chips. The CEL files were quantile normalised together using rma. Clinical response data are not available yet. Keywords = Apocrine carcinoma Keywords = breast cancer
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Direct links to NCBI, no account and no request form: the whole study as GSE1561_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 49 samples.

Also filed as BioProject PRJNA90875. Searching any of these in the dataset finder brings you back here.

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