Expression data from Mayo Clinic Pancreatic Tumor and Normal samples
Expression microarray · human · 52 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Topic
- Pancreatic cancerThis series is part of our curated briefing on it.
- Samples
- 52 samples: 52 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE16515_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA116073. Searching any of these in the dataset finder brings you back here.
Supports a case/control comparison: 36 samples read as cases, 16 as controls.
How we read this: Read from 52 sample titles: 52 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM414924 Pancreatic Sample 6-Tumor
- GSM414925 Pancreatic Sample 7-Tumor
- GSM414926 Pancreatic Sample 1-Tumor
- GSM414927 Pancreatic Sample 16-Tumor
- GSM414928 Pancreatic Sample 16-Normal
- GSM414929 Pancreatic Sample 53-Tumor
- GSM414930 Pancreatic Sample 53-Normal
- GSM414931 Pancreatic Sample 9-Tumor
- GSM414932 Pancreatic Sample 9-Normal
- GSM414933 Pancreatic Sample 11-Tumor
- GSM414934 Pancreatic Sample 11-Normal
- GSM414935 Pancreatic Sample 12-Tumor
- GSM414936 Pancreatic Sample 13-Tumor
- GSM414937 Pancreatic Sample 54-Tumor
- GSM414938 Pancreatic Sample 54-Normal
- GSM414939 Pancreatic Sample 15-Tumor
- GSM414940 Pancreatic Sample 15-Normal
- GSM414941 Pancreatic Sample 14-Tumor
- GSM414942 Pancreatic Sample 14-Normal
- GSM414943 Pancreatic Sample 17-Tumor
- GSM414944 Pancreatic Sample 20-Tumor
- GSM414945 Pancreatic Sample 5-Tumor
- GSM414946 Pancreatic Sample 4-Tumor
- GSM414947 Pancreatic Sample 4-Normal
- GSM414948 Pancreatic Sample 19-Tumor
- GSM414949 Pancreatic Sample 21-Tumor
- GSM414950 Pancreatic Sample 22-Tumor
- GSM414951 Pancreatic Sample 23-Tumor
- GSM414952 Pancreatic Sample 24-Tumor
- GSM414953 Pancreatic Sample 24-Normal
- GSM414954 Pancreatic Sample 25-Tumor
- GSM414955 Pancreatic Sample 25-Normal
- GSM414956 Pancreatic Sample 30-Tumor
- GSM414957 Pancreatic Sample 30-Normal
- GSM414958 Pancreatic Sample 26-Tumor
- GSM414959 Pancreatic Sample 28-Tumor
- GSM414960 Pancreatic Sample 32-Tumor
- GSM414961 Pancreatic Sample 29-Tumor
- GSM414962 Pancreatic Sample 31-Tumor
- GSM414963 Pancreatic Sample 31-Normal
+ 12 more — browse all 52 samples with per-sample file links →
- GSE107610 Gene expression data of organoids derived from human pancreatic tumor and normal pancrea samples. 57 samples same disease briefing · shares pancreatic, normal
- GSE11838 Pancreatic Tumor vs Various Tissue Normals 107 samples same disease briefing · shares pancreatic, normal
- GSE132956 Gene Expression Data of Pancreatic Ductal Adenocarcinoma and Normal Tissue 15 samples same disease briefing · shares pancreatic, normal
- GSE71729 Virtual Microdissection of Pancreatic Ductal Adenocarcinoma Reveals Tumor and Stroma Subtypes. 357 samples same disease briefing · shares pancreatic
- GSE132946 Tumor Infiltrating Lymphocytes and Immune-Related Genes as Predictors of Outcome in Pancreatic Adenocarcinoma 6 samples same disease briefing · shares pancreatic
- GSE102238 Gene expression signatures associated with Perineural Invasion in pancreatic ductal adenocarcinoma 100 samples same disease briefing · shares pancreatic
- GSE14245 Multiple Salivary Biomarkers for Early Detection of Pancreatic Cancer 24 samples same disease briefing · shares pancreatic
- GSE107818 A serum-induced transcriptome and serum cytokine signature obtained at diagnosis correlates with the development of early pancreatic ductal adenocarcinoma metastasis 11 samples same disease briefing · shares pancreatic
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.