DNA methylation data from human iPS cells and fibroblasts
DNA methylation · human · 12 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI.
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE18227_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA123499. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM455529 Fibroblast 6 input, methyl-depleted
- GSM455530 iPS 6 input, methyl-depleted
- GSM455531 Fibroblast 5 input, methyl-depleted
- GSM455532 iPS 5 input, methyl-depleted
- GSM455533 Fibroblast 1 input, methyl-depleted
- GSM455534 iPS 1 input, methyl-depleted
- GSM455535 Fibroblast 2 input, methyl-depleted
- GSM455536 iPS 2 input, methyl-depleted
- GSM455537 Fibroblast 3 input, methyl-depleted
- GSM455538 iPS 3 input, methyl-depleted
- GSM455539 Fibroblast 4 input, methyl-depleted
- GSM455540 iPS 4 input, methyl-depleted
- GSE74193 Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex 675 samples shares methylation
- GSE72775 DNA methylation profiles of human blood samples from Hispanics and Caucasians 335 samples shares methylation
- GSE216650 Human Tumor Atlas Pilot Project (HTAPP) neuroblastoma methylation array datasets 35 samples shares methylation
- GSE78874 DNA methylation profiles of human saliva 259 samples shares methylation
- GSE36278 Methylation data from glioblastoma tumor samples 142 samples shares methylation
- GSE93646 Microarray-based DNA methylation profiles of primary medulloblastomas 428 samples shares methylation
- GSE49377 Methylation profiling data from medulloblastoma tumor samples 46 samples shares methylation
- GSE72777 DNA methylation profiles of human blood samples from younger Tsimane and Caucasians 46 samples shares methylation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.