RNA-seq profiling of wild type and Trim33-/- dendritic cell-related progenitors
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- TRIM33 plays a critical role in regulating dendritic cell differentiation and homeostasis by modulating Irf8 and Bcl2l11 transcriptionCellular & molecular immunology · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE194246_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA799935 and SRA study SRP356429. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5831602 MPP_C1 MPP_C
- GSM5831603 MPP_C2 MPP_C
- GSM5831604 MPP_C3 MPP_C
- GSM5831605 MPP_K1 MPP_K
- GSM5831606 MPP_K2 MPP_K
- GSM5831607 MPP_K3 MPP_K
- GSM5831608 CD115-CDP_C1 CD115-CDP_C
- GSM5831609 CD115-CDP_C2 CD115-CDP_C
- GSM5831610 CD115-CDP_C3 CD115-CDP_C
- GSM5831611 CD115-CDP_K1 CD115-CDP_K
- GSM5831612 CD115-CDP_K2 CD115-CDP_K
- GSM5831613 CD115-CDP_K3 CD115-CDP_K
- GSM5831614 CLP_C1 CLP_C
- GSM5831615 CLP_C2 CLP_C
- GSM5831616 CLP_C3 CLP_C
- GSM5831617 CLP_K1 CLP_K
- GSM5831618 CLP_K2 CLP_K
- GSM5831619 CLP_K3 CLP_K
- GSE193183 RNA-seq profiling of wild type and Trim33-/- splenic dendritic cells 16 samples shares trim33, dendritic, rna-seq, wild, type
- GSE337601 XCR1+ and CD11b+ migratory dendritic cells cooperate for the crosspriming of intratumoral CD8+ T cells with a tissue-resident memory phenotype [RNA-Seq] 36 samples shares dendritic, rna-seq, type
- GSE252188 Tonic type I interferon signaling optimizes the antiviral function of plasmacytoid dendritic cells [Bulk RNA-seq] 15 samples shares dendritic, rna-seq, type
- GSE280985 An immunobiliary single-cell atlas resolves crosstalk between type 2 conventional dendritic cells and γδ T cells in cholangitis [scRNA-seq] 14 samples shares dendritic, rna-seq, type
- GSE189297 RNA sequencing of wild type or calcineurin-deficient mouse bone marrow-derived dendritic cells stimulated with or without lipoarabinomannan (LAM) from Mycobacterium tuberculosis Aoyama-B 10 samples shares dendritic, wild, type
- GSE293874 Anchored screening identifies transcription factor blueprints underlying dendritic cell diversity and subset-specific anti-tumor immunity [mouse bulk RNA-seq] 167 samples shares dendritic, rna-seq
- GSE326003 The differentiation of myeloid progenitors is effected by cascading waves of coordinated gene expression that remodel cellular physiology in a characteristic sequence [RNA-seq] 165 samples shares progenitors, rna-seq
- GSE309574 Transcriptional profiling defines unique subtypes of transit amplifying neural progenitors within the neonatal mouse subventricular zone 20 samples shares progenitors, type
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.