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Glucose controls protein-protein interactions and tissue differentiation [ChIP-Seq]

GSE197201 Homo sapiens Genome binding/occupancy profiling by high throughput sequencing 8 samples Submitted 2025/02/21 Platform GPL20301
Summary
Abstract: Glucose serves as a universal energy currency in living organisms, however, its potential non-energetic biomolecular functions are less well defined. Glucose was among the most increased analytes among >14,000 assessed across epidermal differentiation, an elevation verified in tissue engineered with fluorescent glucose sensors and also observed in differentiating cells from other tissues. Free glucose accumulation, but not its increased metabolism, was essential for epidermal differentiation and required GLUT1, GLUT3, and SLC5A1 transporters. Glucose affinity chromatography and azido-glucose click chemistry revealed direct glucose binding to a variety of regulatory proteins, including the IRF6 transcription factor (TF), whose epidermal knockout confirmed its requirement in glucose-dependent differentiation. Glucose binding mediated IRF6 dimerization, DNA affinity, and genomic targeting. The IRF6R84C mutant found in poorly differentiated cancers was unable to bind glucose. These data demonstrate a non-energetic role for glucose in modulating protein multimerization to control genome dynamics. Purpose: To determine the impact of glucose modulation on IRF6 genomic localization during keratinocyte differentiation
Published in
Glucose modulates IRF6 transcription factor dimerization to enable epidermal differentiation
Lopez-Pajares V, Bhaduri A, Zhao Y et al. · Cell stem cell 2025 · PMID 40120584 · doi:10.1016/j.stem.2025.02.017
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Direct links to NCBI, no account and no request form: the whole study as GSE197201_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA809361 and SRA study SRP360967. Searching any of these in the dataset finder brings you back here.

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