Adult leptomeningeal vestigial neural crest-derived multipotent cells promote vascular repair after stroke.
RNA-seq (gene expression) · mouse · 17 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 17 samples: 5 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Adult leptomeningeal vestigial neural crest-derived multipotent cells promote vascular repair after strokeCell reports · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE197341_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA809917 and SRA study SRP361280. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 17 samples.
How we read this: 5 replicated groups read from 17 sample titles; they account for 17 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM5914826 Cerebral cortex, sham, rep1 Cerebral cortex, sham,
- GSM5914827 Cerebral cortex, sham, rep2 Cerebral cortex, sham,
- GSM5914828 Cerebral cortex, sham, rep3 Cerebral cortex, sham,
- GSM5914829 Cerebral cortex, dMCAO, d3, rep1 Cerebral cortex, dMCAO,…
- GSM5914830 Cerebral cortex, dMCAO, d3, rep2 Cerebral cortex, dMCAO,…
- GSM5914831 Cerebral cortex, dMCAO, d3, rep3 Cerebral cortex, dMCAO,…
- GSM5914832 Cerebral cortex, dMCAO, d7, rep1 Cerebral cortex, dMCAO,…
- GSM5914833 Cerebral cortex, dMCAO, d7, rep2 Cerebral cortex, dMCAO,…
- GSM5914834 Cerebral cortex, dMCAO, d7, rep3 Cerebral cortex, dMCAO,…
- GSM5914835 Cerebral cortex, dMCAO, d7, rep4 Cerebral cortex, dMCAO,…
- GSM5914836 Cerebral cortex, dMCAO, d14, rep1 Cerebral cortex, dMCAO,…
- GSM5914837 Cerebral cortex, dMCAO, d14, rep2 Cerebral cortex, dMCAO,…
- GSM5914838 Cerebral cortex, dMCAO, d14, rep3 Cerebral cortex, dMCAO,…
- GSM5914839 Cerebral cortex, dMCAO, d28, rep1 Cerebral cortex, dMCAO,…
- GSM5914840 Cerebral cortex, dMCAO, d28, rep2 Cerebral cortex, dMCAO,…
- GSM5914841 Cerebral cortex, dMCAO, d28, rep3 Cerebral cortex, dMCAO,…
- GSM5914842 Cerebral cortex, dMCAO, d28, rep4 Cerebral cortex, dMCAO,…
- GSE295334 RNA sequencing data of leptomeningeal/perivascular CAMs and MG following LPS stimulation 8 weeks after repopulation 54 samples shares leptomeningeal, vascular
- GSE213158 Multipotent neural stem cells originating from neuroepithelium exist outside of the mouse central nervous system 28 samples shares multipotent, neural
- GSE318159 RNA sequencing data of fate-mapped leptomeningeal/perivascular CAMs 8 weeks after repopulation and 1 day after MCAo 23 samples shares leptomeningeal, vascular
- GSE287588 Yap/Taz function as new mediators of FGF signaling in neural crest-derived cranial suture mesenchymal cells [RNA-seq] 18 samples shares crest-derived, neural
- GSE294773 RNA sequencing data of leptomeningeal/perivascular CAMs 8 weeks after repopulation. 12 samples shares leptomeningeal, vascular
- GSE264326 Metastatic medulloblastoma remodels the local leptomeningeal microenvironment to promote further metastatic colonization and growth 11 samples shares leptomeningeal, promote
- GSE275956 The Ednrb–Aim2–AKT axis regulates neural crest-derived melanoblast proliferation during early development 10 samples shares crest-derived, neural
- GSE295335 RNA sequencing data of leptomeningeal/perivascular CAMs 8 weeks after repopulation. [scRNA-Seq] 8 samples shares leptomeningeal, vascular
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.