The role of DGCR8 in RNA processing in human embryonic teratocarcinoma PA-1 cells.The role of DGCR8 in RNA processing in human embryonic teratocarcinoma PA-1 cells.
Non-coding RNA profiling · human · 28 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 28 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- DGCR8 haploinsufficiency leads to primate-specific RNA dysregulation and pluripotency defectsNucleic acids research · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE197474_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA810443 and SRA study SRP361481. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 28 more — browse all 28 samples with per-sample file links →
- GSE294708 Effect of ablating DGCR8 expression on steady state RNA levels in embryonic teratocarcinoma PA-1 cells 8 samples shares dgcr8, pa-1, teratocarcinoma, embryonic
- GSE197472 Effect of DGCR8 heterozygosity on steady state RNA levels in embryonic teratocarcinoma PA-1 cells 8 samples shares dgcr8, pa-1, teratocarcinoma, embryonic
- GSE294707 Effect of ablating DGCR8 expression on steady state RNA levels in embryonic teratocarcinoma PA-1 cells [RNA-Seq] 4 samples shares dgcr8, pa-1, teratocarcinoma, embryonic
- GSE205798 ATAC-seq to investigate the effect of DGCR8 knockout and heterozygosity DNA accessibility in PA-1 cells 6 samples shares dgcr8, pa-1
- GSE264445 A DGCR8/FLII-dominated on-off switch for immediate-early genes governs embryo implantation in mouse and human 5 samples shares dgcr8
- GSE209843 DGCR8 haploinsufficiency leads to primate-specific RNA dysregulation and pluripotency defects 18 samples shares dgcr8
- GSE294748 DGCR8 controls retrotransposon-derived double-stranded RNA accumulation and interferon activation 9 samples shares dgcr8
- GSE209770 DGCR8 haploinsufficiency leads to primate-specific RNA dysregulation and pluripotency defects 9 samples shares dgcr8
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.