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Divergent composition and transposon-silencing activity of small RNAs in mammalian oocytes

GSE200470 Capra hircus; Rattus norvegicus; Cavia porcellus; Macaca fascicularis; Oryctolagus cuniculus; Cricetulus griseus; Mesocricetus auratus; Mus musculus; Danio rerio; Homo sapiens; Canis lupus familiaris; Sus scrofa domesticus Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other 138 samples 2024/03/06 GPL26786GPL24247GPL27425GPL28212GPL24995GPL28997GPL25760GPL27106GPL28437GPL25947GPL29562GPL24676
Summary
We found piRNAs with different lengths represented the predominant small RNA species in oocytes from the 12 explored species, except mouse. We found endo-siRNAs resulted from the truncated Dicer isoform were mouse-specific, and os-piRNAs associating with PIWIL3 in human oocytes are widespread in mammals and are typically with low levels of the 2’-3’-O-methylation. The sequences of many highly expressed piRNA clusters are fast-evolving compared with their syntenic genomic locations, and the TE families distributing in the conserved piRNA clusters are various between species.
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NCBI GEO page ↗ Paper (PMID 38532500) ↗ {# Names what the click gives you. "Open in finder" meant nothing to a visitor who arrived from a search engine and has never seen the tool. #} Find more RNA-seq datasets →
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