← BioTransfer GEO Dataset Finder
GEO series

Rnf20 levels modulate the VEGF-Notch signaling circuits during sprouting angiogenesis [03ATAC_seq-Retina]

GSE212523 Mus musculus Genome binding/occupancy profiling by high throughput sequencing 4 samples Submitted 2024/08/18 Platform GPL23479
Summary
Tight control of cell fate choices is crucial for proper vessel development. Here we show that Rnf20, the major E3 ubiquitin ligase of histone H2B, plays a key role in the tight control of VEGF-Notch signaling, which is crucial for proper vessel growth and patterning, as well as for the dynamic tip-stalk cell fate at the vascular front. We demonstrate that Rnf20 is dynamically expressed in the developing retina and controls vessel growth through two distinct modes of action. On the one hand, it restricts gene activation by the endothelial transcription factor ERG and on the other, it orchestrates large-scale mRNA processing events, which change the bioavailability and function of critical pro-angiogenic factors. We show that Rnf20 plays a key role for the upregulation of both VEGFR2 through alternative polyadenylation and VEGFA through intron inclusion, as well as for suppressing the ability of Notch1 to bind to chromatin. Interestingly, perturbations of RNF20 have been associated with complex cardiovascular malformations in human patients, suggesting that delineating the mechanisms that control Rnf20 expression and activity may provide new insights into diseases caused by vascular dysfunction.
Published in
RNF20-mediated transcriptional pausing and VEGFA splicing orchestrate vessel growth
Tetik-Elsherbiny N, Elsherbiny A, Setya A et al. · Nature cardiovascular research 2024 · PMID 39322771 · doi:10.1038/s44161-024-00546-5
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE212523_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA875897 and SRA study SRP395238. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 4 more — browse all 4 samples with per-sample file links →

Similar datasets

Search all mouse ChIP / ATAC / CUT&Tag datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.