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Synthetic antagonist of a histone reader reveals and targets genes essential for inflammation

GSE21910 Mus musculus Genome binding/occupancy profiling by high throughput sequencing 56 samples Submitted 2010/11/10 Platform GPL9250
Summary
Post-translational modifications of histones determines cell lineage- or signal-specific gene expression. Depending on the type and combination of modifications, histones bind to functionally distinct effector proteins ('readers') that control gene activation or silencing. The current pharmacological modulation of the epigenome aims to control gene expression by regulation of the enzymes that catalyze post-translational histone modifications. Here we present a novel pharmacological approach that targets gene expression by interfering with the function of histone ?readers?. We describe the impact of a synthetic compound that selectively occupies the acetylated histone-binding pocket of the Bromodomain and Extra Terminal domain (BET) family of proteins and prevents their interaction with acetylated histones. The bromodomain blocking compound suppresses the expression of a specific subset of key inflammatory genes in activated macrophages and confers protection against LPS-induced septic shock in vivo. Our findings suggest that small molecules specifically targeting histone 'readers' can serve as a new generation of drugs to treat immune diseases.
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Direct links to NCBI, no account and no request form: the whole study as GSE21910_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 56 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA126833 and SRA study SRP002485. Searching any of these in the dataset finder brings you back here.

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