A human neural crest model reveals the developmental impact of neuroblastoma-associated chromosomal aberrations [ATAC-seq]
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 51 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 51 samples: 51 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- A human neural crest model reveals the developmental impact of neuroblastoma-associated chromosomal aberrationsNature communications · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE219151_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA907265 and SRA study SRP410838. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 51 sample titles: 51 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM6774634 17q1qMYCN_D14_1 [ATAC-Seq]
- GSM6774635 17q1qMYCN_D14_2 [ATAC-Seq]
- GSM6774636 17q1qMYCN_D14_3 [ATAC-Seq]
- GSM6774637 17q1qMYCN_D19_1 [ATAC-Seq]
- GSM6774638 17q1qMYCN_D19_2 [ATAC-Seq]
- GSM6774639 17q1qMYCN_D19_3 [ATAC-Seq]
- GSM6774640 17q1qMYCN_D9_2 [ATAC-Seq]
- GSM6774641 17q1qMYCN_D9_3 [ATAC-Seq]
- GSM6774642 17q1q_D0_1 [ATAC-Seq]
- GSM6774643 17q1q_D0_2 [ATAC-Seq]
- GSM6774644 17q1q_D14_1 [ATAC-Seq]
- GSM6774645 17q1q_D14_2 [ATAC-Seq]
- GSM6774646 17q1q_D14_3 [ATAC-Seq]
- GSM6774647 17q1q_D19_1 [ATAC-Seq]
- GSM6774648 17q1q_D19_2 [ATAC-Seq]
- GSM6774649 17q1q_D19_3 [ATAC-Seq]
- GSM6774650 17q1q_D3_1 [ATAC-Seq]
- GSM6774651 17q1q_D3_2 [ATAC-Seq]
- GSM6774652 17q1q_D3_3 [ATAC-Seq]
- GSM6774653 17q1q_D9_1 [ATAC-Seq]
- GSM6774654 17q1q_D9_2 [ATAC-Seq]
- GSM6774655 17q1q_D9_3 [ATAC-Seq]
- GSM6774656 17q_D0_1 [ATAC-Seq]
- GSM6774657 17q_D0_2 [ATAC-Seq]
- GSM6774658 17q_D0_3 [ATAC-Seq]
- GSM6774659 17q_D14_1 [ATAC-Seq]
- GSM6774660 17q_D14_2 [ATAC-Seq]
- GSM6774661 17q_D19_1 [ATAC-Seq]
- GSM6774662 17q_D19_2 [ATAC-Seq]
- GSM6774663 17q_D19_3 [ATAC-Seq]
- GSM6774664 17q_D3_1 [ATAC-Seq]
- GSM6774665 17q_D3_2 [ATAC-Seq]
- GSM6774666 17q_D3_3 [ATAC-Seq]
- GSM6774667 17q_D9_1 [ATAC-Seq]
- GSM6774668 17q_D9_2 [ATAC-Seq]
- GSM6774669 17q_D9_3 [ATAC-Seq]
- GSM6774670 WT_D0_1 [ATAC-Seq]
- GSM6774671 WT_D0_2 [ATAC-Seq]
- GSM6774672 WT_D0_3 [ATAC-Seq]
- GSM6774673 WT_D14_1 [ATAC-Seq]
+ 11 more — browse all 51 samples with per-sample file links →
- GSE286146 Two parallel neural ectoderm populations contribute to the developing brain [ATAC-seq] 30 samples shares atac-seq, neural
- GSE315440 LncRNAs coordinate doxycycline-induced gene expression response in human iPSCs (ATAC-seq) 341 samples shares atac-seq
- GSE291386 Chromatin accessibility profiling of HSPC-derived erythroblast differentiation [ATAC-seq] 165 samples shares atac-seq
- GSE289805 Histone H4 lysine 20 tri-methylation safeguards breast cancer lineage fidelity and unfolded protein response [ChIP-seq/ATAC-seq] 126 samples shares atac-seq
- GSE298042 ATAC-Seq of Patient-Derived Xenografts in Metastatic Castration Resistant Prostate Cancer (LuCaP Series) 77 samples shares atac-seq
- GSE270684 The EZH2 and EZH1 inhibitor valemetostat derepresses p16INK4a to induce early endomitotic exit in megakaryocytes [scATAC-Seq] 66 samples shares atac-seq
- GSE318082 BAF complexes maintain accessibility at stimulus-responsive chromatin and are required for transcriptional stimulus responses [ATAC-seq] 63 samples shares atac-seq
- GSE280565 Pioneering new enhancers by GATA3: role of facilitating transcription factors and chromatin remodeling [ATAC-seq] 48 samples shares atac-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.