Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases
Expression microarray · human · 274 samples
- What it is
- Expression microarrayGene activity read on a chip (the older technology that RNA-seq replaced).
- Organism
- Homo sapiens (human)
- Samples
- 274 samples: 6 conditions, mostly with about 82 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
Read the full summary ↓
Direct links to NCBI, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need.
Whole study · RAW.tar
Everything the authors deposited as one archive (GSE22098_RAW.tar), including the raw array or instrument files. Can be large; the picker in step 2 takes just the samples you need.
What the files usually look like: For arrays the series matrix is normally the normalised expression table you want; the raw array files (CEL and similar) are in the RAW.tar.
Also filed as BioProject PRJNA128917. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 270 samples.
How we read this: 6 replicated groups read from 274 sample titles; they account for 270 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM549324 WB-Still-4639 WB-Still
- GSM549325 WB-Still-5161 WB-Still
- GSM549326 WB-Still-5163 WB-Still
- GSM549327 WB-Still-5667 WB-Still
- GSM549328 WB-Still-5666 WB-Still
- GSM549329 WB-Still-1281 WB-Still
- GSM549331 WB-Still-1102 WB-Still
- GSM549333 WB-Still-1934 WB-Still
- GSM549335 WB-Still-1935 WB-Still
- GSM549336 WB-Still-1936 WB-Still
- GSM549338 WB-Still-2166 WB-Still
- GSM549340 WB-Still-2358 WB-Still
- GSM549342 WB-Still-2362 WB-Still
- GSM549344 WB-Still-5870 WB-Still
- GSM549345 WB-Still-5871 WB-Still
- GSM549346 WB-Still-5872 WB-Still
- GSM549347 WB-Still-6038 WB-Still
- GSM549348 WB-Still-6167 WB-Still
- GSM549349 WB-Still-6168 WB-Still
- GSM549350 WB-Still-6037 WB-Still
- GSM549351 WB-Still-8980 WB-Still
- GSM549352 WB-Still-7760 WB-Still
- GSM549353 WB-Still-8560 WB-Still
- GSM549354 WB-Still-6652 WB-Still
- GSM549355 WB-Still-6653 WB-Still
- GSM549356 WB-Still-7759 WB-Still
- GSM549357 WB-Still-8059 WB-Still
- GSM549358 WB-ASLE-5320 WB-ASLE
- GSM549359 WB-ASLE-5321 WB-ASLE
- GSM549360 WB-ASLE-5670 WB-ASLE
- GSM549361 WB-ASLE-5671 WB-ASLE
- GSM549362 WB-ASLE-6066 WB-ASLE
- GSM549363 WB-ASLE-6067 WB-ASLE
- GSM549364 WB-ASLE-6068 WB-ASLE
- GSM549365 WB-ASLE-6643 WB-ASLE
- GSM549366 WB-ASLE-6644 WB-ASLE
- GSM549367 WB-ASLE-6069 WB-ASLE
- GSM549368 WB-ASLE-6070 WB-ASLE
- GSM549369 WB-ASLE-6071 WB-ASLE
- GSM549370 WB-ASLE-6641 WB-ASLE
+ 234 more — browse all 274 samples with per-sample file links →
- GSE287043 Unique Mycobacterium tuberculosis-specific blood immune signatures in sarcoidosis: implications for clinical diagnosis 542 samples shares tuberculosis, blood
- GSE72775 DNA methylation profiles of human blood samples from Hispanics and Caucasians 335 samples shares profiles, blood
- GSE247998 Brain and Blood Transcriptome Profiles Delineate Common Genetic Pathways across Suicidal Ideation and Suicide 100 samples shares profiles, blood
- GSE72777 DNA methylation profiles of human blood samples from younger Tsimane and Caucasians 46 samples shares profiles, blood
- GSE295224 Dual single-cell and bulk RNA sequencing reveal transcriptional profiles underlying heterogenous host-parasite interactions in human peripheral blood mononuclear cells 42 samples shares profiles, blood
- GSE232381 RNA-seq of Peripheral Blood Cells Identifies Molecular Network Linked to Lymphocyte Subset Aberrations and Active Lupus Nephritis in SLE 25 samples shares active, blood
- GSE239576 Comparison of Renal Transcriptome Profiles in Patients with Active Lupus Nephritis Reveals Possible New Mechanisms of Disease Progression 21 samples shares profiles, active
- GSE241908 Transcriptomic profiles of ovarian cancer cells isolated from paired cancer ascites before and after chemotherapy 14 samples shares profiles, other
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.