← BioTransfer GEO Dataset Finder
GEO series

Comparison the transcriptional changes in the mutation of VZV circVLTs

GSE223957 Homo sapiens Expression profiling by high throughput sequencing 9 samples Submitted 2024/04/27 Platform GPL23227
Summary
Sequence analyses shown that most exons of VZV circVLTs were overlapped with ORFs, except for exon5, which was an ideal mutation position. Using a galK positive/counter selection VZV bacteria artificial chromosome (BAC) system, we replaced upstream (104,765-104,785 Mutation2, pOKA-M2) or downstream (104,785-104,805, Mutation1, pOKA-M1) of circVLTs BSJ exon5 with 20 bp random sequences in VZV genomic DNA level. The code used in this study and extended data are available from the GitHub repository (https://github.com/ShaominYang/VZV_circRNA)
Published in
Identification and characterization of Varicella Zoster Virus circular RNA in lytic infection
Yang S, Cao D, Jaijyan DK et al. · Nature communications 2024 · PMID 38858365 · doi:10.1038/s41467-024-49112-4
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE223957_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 9 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA929209 and SRA study SRP419921. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 9 more — browse all 9 samples with per-sample file links →

Similar datasets

Search all human RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.