Effect of depletion of Spi1, Cebpb, and Jun on gene expression during therapy-induced-senescence of primary, murine Eµ-myc;bcl2 B-cell lymphomas
RNA-seq (gene expression) · mouse · 51 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 51 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE224948_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA933168 and SRA study SRP421691. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 51 more — browse all 51 samples with per-sample file links →
- GSE246492 Effect of depletion of C15ORF48/miR-147 on gene expression in primary colonocytes [colonocytes] 12 samples shares depletion, primary
- GSE303613 Inhibition of SPI1 by ADAP regulates S100A8/A9 signaling in macrophages to control the development of colitis 12 samples shares spi1
- GSE198770 Circadian transcriptional profile of tissues with and without neutrophil depletion 191 samples shares depletion
- GSE302808 Depletion of Peripheral Monocytes Alters Long-Term Gene Expression in Microglia in a Murine Model of Traumatic Brain Injury 84 samples shares depletion
- GSE309776 Degron models: a toolbox for rapid in vivo depletion of essential proteins regulating mRNA metabolism 60 samples shares depletion
- GSE285757 Ftsj1 deficiency influences diverse ncRNA networks in murine organs (poly-A-seq and rRNA-depletion-seq) 60 samples shares depletion
- GSE314023 Depletion of individual dietary amino acids induces distinct metabolic and chromatin states 60 samples shares depletion
- GSE269745 Effects of depletion of Irf8 and Mafb on gene expression of adult microglia and CNS border associtated macrophages (CAMs) 44 samples shares depletion
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.