Tissue-specific non-heritable influence drive uterine immune system variation
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 96 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 96 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Tissue-specific nonheritable influences drive endometrial immune system variationScience immunology · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE225042_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA933605 and SRA study SRP422520. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 96 more — browse all 96 samples with per-sample file links →
- GSE225041 Tissue-specific non-heritable influence drive uterine immune system variation (RNA-seq) 48 samples shares tissue-specific, non-heritable, influence, variation, uterine, system, drive
- GSE225040 Tissue-specific non-heritable influence drive uterine immune system variation (ATAC-seq) 48 samples shares tissue-specific, non-heritable, influence, variation, uterine, system, drive
- GSE236241 Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases 22 samples shares variation, drive
- GSE48472 Identification and systematic annotation of tissue-specific differentially methylated regions using the Illumina 450k array 56 samples shares tissue-specific, system
- GSE294057 Unveiling Tissue-Specific Transcriptional Adaptations in iPSC-Derived Fibroblasts via Co-Culture Systems 27 samples shares tissue-specific, system
- GSE235999 Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases [RNA-seq] 12 samples shares variation, drive
- GSE236240 Sequence-to-expression approach to identify etiological non-coding DNA variations in P53 and cMYC-driven diseases [ChIP-seq] 10 samples shares variation, drive
- GSE248730 BCG vaccination alters the epigenetic landscape of progenitor cells in human bone marrow to influence innate immune responses 42 samples shares influence
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.