Signaling basis of gastric epithelial cell differentiation revealed by human and mouse organoids [RNA-Seq]
RNA-seq (gene expression) · human · 26 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 26 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- The critical role of BMP signaling in gastric epithelial cell differentiation revealed by organoidsCell regeneration (London, England) · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE226195_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA939152. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 26 more — browse all 26 samples with per-sample file links →
- GSE226196 Signaling basis of gastric epithelial cell differentiation revealed by human and mouse organoids [scRNA-Seq] 11 samples shares epithelial, organoids, revealed, gastric, rna-seq, basis
- GSE276320 Chromodomain protein CDYL confers forebrain identity to human cortical organoids by inhibiting neuronatin [RNA-seq] 18 samples shares organoids, rna-seq
- GSE283056 ZNF296 drives immune evasion in epithelial cancer cells [RNA-seq] 10 samples shares epithelial, rna-seq
- GSE266952 Inflammation awakens dormant cancer cells by modulating epithelial-mesenchymal phenotypic state [scRNA-Seq] 6 samples shares epithelial, rna-seq
- GSE44183 Genetic Programs in Human and Mouse Early Embryos Revealed by Single-Cell RNA-Sequencing 47 samples shares revealed, rna-seq
- GSE327614 Early cell autonomous and niche-mediated alveolar epithelial response to influenza infection in primary lung organoids 24 samples shares epithelial, organoids
- GSE25965 Transduction signaling signature of Wilms tumor revealed by parallel analysis of kidney differentiation 78 samples shares revealed
- GSE305923 exoWNT3A/RSPO1 improves HE to LPC differentiation, hepatic organoids growth, and different acute and chronic liver injuries. 72 samples shares organoids
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.