Tracing functional (epi)genomic imprints and their evolutionary origins in human defense antiviral cellular response (STARR-transcripts-Seq)
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 20 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 20 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- An evolutionarily conserved constellation of functional cis-elements programs the virus-responsive fate of the human (epi)genomeNucleic acids research · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE229442_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA954444 and SRA study SRP432063. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 20 more — browse all 20 samples with per-sample file links →
- GSE229441 Tracing functional (epi)genomic imprints and their evolutionary origins in human defense antiviral cellular response (DNaseI-Seq) 9 samples shares evolutionary, antiviral, imprints, cellular, tracing, origins, defense
- GSE229443 Tracing functional (epi)genomic imprints and their evolutionary origins in human defense antiviral cellular response (ChIP-Seq II) 6 samples shares evolutionary, antiviral, imprints, cellular, tracing, origins, defense
- GSE229438 Tracing functional (epi)genomic imprints and their evolutionary origins in human defense antiviral cellular response (RNA-Seq) 12 samples shares evolutionary, antiviral, imprints, cellular, tracing, origins, defense
- GSE334185 Cellular senescence dysregulates antiviral interferon responses in idiopathic pulmonary fibrosis 27 samples shares antiviral, cellular
- GSE312190 A highly prevalent lupus risk haplotype increases IRF7-dependent induction of IFN-alpha enhancing antiviral defense and exacerbating autoimmunity 24 samples shares antiviral, defense
- GSE317875 PATZ1 Condensation Adjacent to PML Nuclear Bodies Suppresses HBoV Transcription as an Intrinsic Antiviral Defense 21 samples shares antiviral, defense
- GSE282879 Natural product inhibition of SARS-CoV-2 guanine-N7 RNA cap methyltransferase shows potent cellular antiviral efficacy 8 samples shares antiviral, cellular
- GSE335058 Evolutionary guided transcription factor design programs novel T cell states [ChIP-Seq] 66 samples shares evolutionary
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.