Dysfunctional effector memory CD8 T cells in the bronchoalveolar compartment of people living with HIV
RNA-seq (gene expression) · human · 71 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 71 samples: 71 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Dysfunctional bronchoalveolar effector memory CD8(+) T cells in tuberculosis-exposed people living with antiretroviral-naïve HIV infectioniScience · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE230738_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA962490 and SRA study SRP434833. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 71 sample titles: 71 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7233275 batch-1_0003-B
- GSM7233276 batch-1_0003-P
- GSM7233277 batch-1_0008-P
- GSM7233278 batch-1_0013-B
- GSM7233279 batch-1_0013-P
- GSM7233280 batch-1_0021-B
- GSM7233281 batch-1_0021-P
- GSM7233282 batch-1_0024-B
- GSM7233283 batch-1_0024-P
- GSM7233284 batch-1_0036-B
- GSM7233285 batch-1_0036-P
- GSM7233286 batch-1_0038-B
- GSM7233287 batch-1_0038-P
- GSM7233288 batch-1_0041-B
- GSM7233289 batch-1_0041-P
- GSM7233290 batch-1_0046-B
- GSM7233291 batch-1_0046-P
- GSM7233292 batch-1_0050-B
- GSM7233293 batch-1_0050-P
- GSM7233294 batch-1_0052-B
- GSM7233295 batch-1_0052-P
- GSM7233296 batch-1_0057-B
- GSM7233297 batch-1_0057-P
- GSM7233298 batch-1_0069-B
- GSM7233299 batch-1_0069-P
- GSM7233300 batch-1_0073-B
- GSM7233301 batch-1_0073-P
- GSM7233302 batch-1_0076-B
- GSM7233303 batch-1_0076-P
- GSM7233304 batch-1_0088-B
- GSM7233305 batch-1_0088-P
- GSM7233306 batch-1_0093-B
- GSM7233307 batch-1_0093-P
- GSM7233308 batch-1_0099-B
- GSM7233309 batch-1_0099-P
- GSM7233310 batch-1_0113-B
- GSM7233311 batch-1_0113-P
- GSM7233312 batch-1_0120-B
- GSM7233313 batch-1_0120-P
- GSM7233314 batch-2_0003-B
+ 31 more — browse all 71 samples with per-sample file links →
- GSE231628 Dysfunctional effector memory CD8 T cells in the bronchoalveolar compartment of people living with HIV 33 samples shares cd8, hiv, bronchoalveolar, dysfunctional, compartment, effector, memory, people
- GSE332711 CD4/CD8 ratio is associated with structural reorganization of vaccine-induced immune responses in people living with HIV 60 samples shares cd8, hiv, people
- GSE270651 Gene expression profile at single cell level of HIV-1 and HIV-2 specific CD8 T cells 17 samples shares cd8, hiv
- GSE254645 ACCELERATED CD8+ T CELL MATURATION IN INFANTS WITH PERINATAL HIV INFECTION 28 samples shares cd8, hiv
- GSE280113 Progenitor effects and unique transcriptomic signatures linked to differentiation phenotype in clonally expanded antigen-specific CD8 T memory stem cells (TSCM) 509 samples shares cd8, memory
- GSE295725 Multimodal delineation of a layer of effector function among exhausted CD8 T cells in tumors 98 samples shares cd8, effector
- GSE290636 RNAseq analysis of blood specimens from ART-suppressed people with HIV prior to analytical treatment interruption 74 samples shares hiv, people
- GSE297039 Multi-omics Analysis Revealed Unique Features of Age-associated Type2 CD8 Memory T cells 30 samples shares cd8, memory
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.