Employing totipotent cells to reconstruct embryogenesis
RNA-seq (gene expression) · mouse · 13 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 13 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Exploring the impacts of senescence on implantation and early embryonic development using totipotent cell-derived blastoidsJournal of advanced research · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE232718_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA973624 and SRA study SRP438237. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 13 more — browse all 13 samples with per-sample file links →
- GSE232634 Employing totipotent cells to reconstruct embryogenesis [RNA-seq] 9 samples shares embryogenesis, reconstruct, totipotent, employing
- GSE232715 Employing totipotent cells to reconstruct embryogenesis [scRNA-seq] 4 samples shares embryogenesis, reconstruct, totipotent, employing
- GSE292862 Modelling mouse embryogenesis from chemically induced totipotent stem cells 22 samples shares embryogenesis, totipotent
- GSE287908 Totipotent-Like Cell-Based Embryo Model Recapitulating Mouse Embryogenesis from Pre-Implantation to Gastrulation [RNA-Seq] 52 samples shares embryogenesis, totipotent
- GSE287909 Totipotent-Like Cell-Based Embryo Model Recapitulating Mouse Embryogenesis from Pre-Implantation to Gastrulation [scRNA-Seq] 8 samples shares embryogenesis, totipotent
- GSE243921 Modeling pre-implantation development using totipotent blastomere-like stem cells [bulk RNA-seq] 104 samples shares totipotent
- GSE274492 The remodeling of bivalent chromatin is essential for mouse peri-implantation embryogenesis [Valid RNA-Seq] 200 samples shares embryogenesis
- GSE251982 Remodeling the step-wise mouse placental development by using totipotent blastomere-like stem cells [RNA-seq] 20 samples shares totipotent
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.