Spatial Transcriptomics of Intraductal Papillary Mucinous Neoplasms of The Pancreas Identifies NKX6-2 Expression as a Driver of Gastric Differentiation and Indolent Biological Potential
Spatial transcriptomics · mouse · 33 samples
- What it is
- Spatial transcriptomicsGene activity measured with its position in a tissue section.
- Organism
- Mus musculus (mouse)
- Samples
- 33 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE233254_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Spatial studies usually ship Space Ranger style folders (count matrix plus tissue images). Look for them among the supplementary files.
Also filed as BioProject PRJNA975567 and SRA study SRP439330. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 33 more — browse all 33 samples with per-sample file links →
- GSE252807 Chrom-seq Identifies RNAs at Chromatin Marks [Chrom_and_RNA_seq] 47 samples shares identifies
- GSE325735 Transcriptomic reprogramming screen identifies SRSF1 as a regulator of aging 839 samples shares identifies
- GSE46995 Molecular signature with high accuracy for biliary atresia identifies a role for Interleukin-8 in pathogenesis of disease 113 samples shares identifies
- GSE252810 Chrom-seq Identifies RNAs at Chromatin Marks 86 samples shares identifies
- GSE298719 A Human Single-cell Atlas Identifies OLR1+ Scar-associated Macrophages as a Therapeutic Target for Chronic Liver Disease 41 samples shares identifies
- GSE29799 RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukemia 30 samples shares identifies
- GSE261915 Integrated computational analysis identifies therapeutic targets with dual action in cancer cells and T cells 21 samples shares identifies
- GSE245373 Mice are not men: scRNA-sequencing of the human atherosclerotic plaque identifies species-specific immune cell phenotypes that associate with clinical disease 11 samples shares identifies
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.