Multi-center Korean cohort study based on RNA-sequencing data targeting COPD patients
RNA-seq (gene expression) · human · 294 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 294 samples: 245 distinct titles, 1 of them repeatedGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Multi-center Korean cohort study based on RNA-sequencing data targeting COPD patientsScientific data · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE240656_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1004581 and SRA study SRP454671. Searching any of these in the dataset finder brings you back here.
How we read this: Read from 294 sample titles: 245 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7706848 11757313
- GSM7706849 11757351
- GSM7706850 11757452
- GSM7706851 11757731
- GSM7706852 11757786
- GSM7706853 11757825
- GSM7706854 11757849
- GSM7706855 11757856
- GSM7706856 11757940
- GSM7706857 11761709
- GSM7706858 11761723
- GSM7706859 11761800
- GSM7706860 11761817
- GSM7706861 11761862
- GSM7706862 11761879
- GSM7706863 11761918
- GSM7706864 11761925
- GSM7706865 11795478
- GSM7706866 11795485
- GSM7706867 11795517
- GSM7706868 11795562
- GSM7706869 11795579
- GSM7706870 11795586
- GSM7706871 11795632
- GSM7706872 11799519
- GSM7706873 11799999
- GSM7706874 11800154
- GSM7706875 11981178
- GSM7706876 11981534
- GSM7706877 11985529
- GSM7706878 11985606
- GSM7706879 11985637
- GSM7706880 11985651
- GSM7706881 11986685
- GSM7706882 11986762
- GSM7706883 11996923
- GSM7706884 12001967
- GSM7706885 12031920
- GSM7706886 12031944
- GSM7706887 12031975
+ 254 more — browse all 294 samples with per-sample file links →
- GSE278206 Characterization of the transcriptional profile of circulating neutrophils from COPD patients [RNA-Seq] 77 samples shares copd
- GSE310058 Single-nucleus transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) [snRNA-seq] 149 samples shares copd
- GSE306950 Dysregulated NK Cell Activation and Myeloid-Lymphoid Imbalance Underpin COPD Progression: Insights from High-Dimensional Immune Profiling and Smoking-Induced Immune Remodeling 35 samples shares copd
- GSE194070 Tumor-intrinsic CD74 expression mediates immune evasion in lung cancer with COPD 16 samples shares copd
- GSE270667 Single-cell sequencing highlights increased atypical AT2 interacting with M1 macrophage in COPD 12 samples shares copd
- GSE296912 scRNA-seq of normal and COPD lungs 7 samples shares copd
- GSE313090 Single-nucleus and spatial transcriptomic profiling of human lung tissue in chronic obstructive pulmonary disease (COPD) 153 samples shares copd
- GSE279852 Single-cell RNA-sequencing of undifferentiated pleomorphic sarcoma, myxofibrosarcoma, and liposarcoma samples from patients participating in a clinical trial studying BO-112 plus Nivolumab and hypofractionated pre-operative radiotherapy. 10 samples shares rna-sequencing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.