Integrated Analysis of lncRNA-miRNA-mRNA Interaction Network in Myocardial Ischemia-Reperfusion Injury During Cardiopulmonary Bypass Surgery in Mouse
Non-coding RNA profiling · mouse · 12 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples: 12 samples, each with a distinct title — no replicated groupsGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE240702_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1004636 and SRA study SRP454706. Searching any of these in the dataset finder brings you back here.
Any grouping that defines a comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Read from 12 sample titles: 12 distinct titles with little repetition. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7701720 Heart, C1 (bio rep1), miRNA-seq
- GSM7701721 Heart, C2 (bio rep2), miRNA-seq
- GSM7701722 Heart, C3 (bio rep3), miRNA-seq
- GSM7701723 Heart, M1 (bio rep1), miRNA-seq
- GSM7701724 Heart, M2 (bio rep2), miRNA-seq
- GSM7701725 Heart, M3 (bio rep3), miRNA-seq
- GSM7707633 Heart, C1 (bio rep1), lncRNA and mRNA-seq
- GSM7707634 Heart, C2 (bio rep2), lncRNA and mRNA-seq
- GSM7707635 Heart, C3 (bio rep3), lncRNA and mRNA-seq
- GSM7707636 Heart, M1 (bio rep1), lncRNA and mRNA-seq
- GSM7707637 Heart, M2 (bio rep2), lncRNA and mRNA-seq
- GSM7707638 Heart, M3 (bio rep3), lncRNA and mRNA-seq
- GSE298751 Prussian blue nanoparticles targeting multiple PANoptosome-mediated PANoptosis for myocardial ischemia-reperfusion injury therapy 15 samples shares ischemia-reperfusion, myocardial
- GSE244474 T cell - DAM feedback loop drives CNS inflammation and neurodegenration in SPG15 at an early age via CCR5-CCL5 interaction [CD3+] 1135 samples shares interaction
- GSE255212 Transcriptomic Signatures of WNT-Driven Pathways and Granulosa Cell-Oocyte Interaction during Primordial Follicle Activation 762 samples shares interaction
- GSE237916 Regulation of T helper cell differentiation by the interplay between histone modification and chromatin interaction 197 samples shares interaction
- GSE269201 Single-cell dynamics of genome-nucleolus interactions captured by nucleolar laser microdissection (NoLMseq) 178 samples shares interaction
- GSE268719 Molecular and epistatic interactions between pioneer transcription factors shape nucleosome dynamics and cell differentiation 169 samples shares interaction
- GSE262290 Metabolic modeling reveals the aging-associated decline of host–microbiome metabolic interactions in mice 156 samples shares interaction
- GSE249877 Gene-environment interaction elicits dystonia-like features and impaired translational regulation in a DYT-TOR1A mouse model 143 samples shares interaction
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.