Gene expression profile of type 2 innate lymphoid cells (ILC2s) from mouse lungs
RNA-seq (gene expression) · mouse · 3 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Postprandial parasympathetic signals promote lung type 2 immunityNeuron · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE240849_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1005553 and SRA study SRP455123. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE202232 Comparing transcriptional profiles of type 2 innate lymphoid cells from WT and Rag1 knockout mice 12 samples shares lymphoid, innate, type
- GSE339493 Interleukin-33 activated group 2 innate lymphoid cells drive type 2 immune dysfunction in endometriosis 41 samples shares lymphoid, innate, type
- GSE256409 Antibody Fc-receptor common gamma chain FcεR1γ stabilizes cell surface receptors in group 3 innate lymphoid cells and promotes anti-infection immunity 20 samples shares lymphoid, innate
- GSE249963 Bulk RNA seq of sorted CD11c cells from lungs of uninfected and Mtb infected wild type mice. 10 samples shares lungs, type
- GSE293054 Innate Lymphoid Cells Integrate Sensing and Plasticity to Control Fungal Infections [whole lung tissue after ILC transfer_Afu infected] 10 samples shares lymphoid, innate
- GSE291075 The transcription factor NFIL3 drives innate lymphoid cell specification from lymphoid progenitors [RNA-seq - ex vivo, Nfil3] 27 samples shares lymphoid, innate
- GSE291316 The transcription factor NFIL3 drives innate lymphoid cell specification from lymphoid progenitors [RNA-seq - Tox] 12 samples shares lymphoid, innate
- GSE291076 The transcription factor NFIL3 drives innate lymphoid cell specification from lymphoid progenitors [RNA-seq - Il7rLT] 12 samples shares lymphoid, innate
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.