← BioTransfer GEO Dataset Finder
GEO series

Autophagy regulates neuronal differentiation by controlling WNT/DVL signal pathway

GSE240920 Homo sapiens Expression profiling by high throughput sequencing 9 samples Submitted 2025/12/02 Platform GPL16791
Summary
Development of human embryonic stem cells (hESCs) technology provides a powerful tool to understand the mechanism of various diseases, as well as a model for human developmental study in vitro. In this study, we generated neurons from hESCs with previously established protocol and we observed that autophagy-related genes were upregulated at neuroepithelial/NPC stage. To check the importance of autophagy activation, bafilomycin was treated at a specific time point. We found that inhibition of autophagy at NPC stage delayed neuronal differentiation, as indicated by the downregulation of neuronal marker TUJ1 and upregulation of NPC marker NESTIN. Further investigation revealed that WNT signaling might be involved as part of the underlying mechanisms. Autophagy negatively regulates WNT signaling by promoting Disheveled-2 (DVL-2) degradation. Disruption of autophagy might lead to failure in the downregulation of WNT signaling and consequently, delaying neuronal differentiation. Dysregulation of autophagy has been associated with a variety of neurological diseases, including Vici syndrome. Here, we developed cerebral organoids culture to model Vici syndrome by introducing loss of function mutation in EPG5 gene. Mutation in EPG5 gene disturbed autophagy process, subsequently induced defect in progenitor cells migration and cortical layer generation in organoids. The results showed how damaged autophagy leads to smaller organoids, recapitulating Vici syndrome-associated microcephaly, and therefore validating the disease relevance of our study.
Published in
Autophagy controls neuronal differentiation by regulating the WNT-DVL signaling pathway
Vidyawan V, Puspita L, Juwono VB et al. · Autophagy 2025 · PMID 39385328 · doi:10.1080/15548627.2024.2407707
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE240920_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 9 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1003287 and SRA study SRP454688. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 9 more — browse all 9 samples with per-sample file links →

Similar datasets

Search all human RNA-seq datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.