Prenatal vitamin D deficiency alters immune cell proportions of offspring in young adult age [RNA-seq]
RNA-seq (gene expression) · mouse · 18 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 18 samples: 6 × PD1 liver VDD vs 6 × PD1 liver VDS vs 3 × MPP4 VDD vs 3 × MPP4 VDSGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Prenatal vitamin D deficiency exposure leads to long-term changes in immune cell proportionsScientific reports · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE242041_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1011260 and SRA study SRP457820. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 4 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM7747895 MPP4 VDD1 MPP4 VDD
- GSM7747896 MPP4 VDD2 MPP4 VDD
- GSM7747897 MPP4 VDD3 MPP4 VDD
- GSM7747898 MPP4 VDS1 MPP4 VDS
- GSM7747899 MPP4 VDS2 MPP4 VDS
- GSM7747900 MPP4 VDS3 MPP4 VDS
- GSM7747901 PD1 liver VDD1 PD1 liver VDD
- GSM7747902 PD1 liver VDD2 PD1 liver VDD
- GSM7747903 PD1 liver VDD3 PD1 liver VDD
- GSM7747904 PD1 liver VDD4 PD1 liver VDD
- GSM7747905 PD1 liver VDD5 PD1 liver VDD
- GSM7747906 PD1 liver VDD6 PD1 liver VDD
- GSM7747907 PD1 liver VDS1 PD1 liver VDS
- GSM7747908 PD1 liver VDS2 PD1 liver VDS
- GSM7747909 PD1 liver VDS3 PD1 liver VDS
- GSM7747910 PD1 liver VDS4 PD1 liver VDS
- GSM7747911 PD1 liver VDS5 PD1 liver VDS
- GSM7747912 PD1 liver VDS6 PD1 liver VDS
- GSE267633 Differential Effects of Prenatal Alcohol Exposure in Mice on Brain Growth and Gene Expression Reveals Early Effects on Cell Cycle and Apoptosis and Delayed Effects on Metabolism in Affected Offspring 151 samples shares offspring, prenatal
- GSE287234 Intrauterine hyperglycemia impairs primordial germ cell development and fertility by sex-specific epigenetic reprogramming interference in mice offspring [RNA-seq] 36 samples shares offspring, rna-seq
- GSE326762 Fate mapping reveals a prenatal-to-neonatal wave of ILC2s with a history of Cd3g expression - RNA-Seq 35 samples shares prenatal, rna-seq
- GSE171815 Loss of BAP1 cooperates with TP53 deficiency to transform a common myelo-erythroid progenitor (RNA-seq - mus musculus) 27 samples shares deficiency, rna-seq
- GSE267771 KMT2C Deficiency Drives Luminal Transdifferentiation into Double-Negative Prostate Cancer and Sensitizes to Fatty Acid Synthase Inhibition [RNA-Seq] 22 samples shares deficiency, rna-seq
- GSE264497 Intestinal Epithelial C/EBPβ Deficiency Impairs Colitis-Associated Tumorigenesis by Disrupting CXCL1 /CXCL2/CXCL5-CXCR2-Mediated Neutrophil Infiltration [RNA-seq ] 15 samples shares deficiency, rna-seq
- GSE250202 Yin Yang 1 Deficiency in Skeletal Muscle Stem Cell Aggravates Muscle Fibrosis in Duchenne Muscular Dystrophy Mouse by Disrupting Muscle Stem Cell/Macrophage/Fibro-adipogenic Progenitor Crosstalk [RNA-Seq] 12 samples shares deficiency, rna-seq
- GSE315505 Prenatal diisononyl phthalate exposure induces the development of pulmonary dysplasia in offspring 12 samples shares offspring, prenatal
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.