Precise immuno-fluorescence canceling enables highly multiplexed imaging [RNA-seq]
Single-cell RNA-seq · human · 3 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart. Read from the summary: GEO's own type field only says 'expression profiling by sequencing', so confirm it in the paper.
- Organism
- Homo sapiens (human)
- Samples
- 3 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Precise immunofluorescence canceling for highly multiplexed imaging to capture specific cell statesNature communications · 2024
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE242886_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1015232 and SRA study SRP459772. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 3 more — browse all 3 samples with per-sample file links →
- GSE242814 Precise immuno-fluorescence canceling enables highly multiplexed imaging [scRNA-seq] 12 samples shares immuno-fluorescence, multiplexed, canceling, precise, enables, imaging, rna-seq, highly
- GSE242887 Precise immuno-fluorescence canceling enables highly multiplexed imaging 15 samples shares immuno-fluorescence, multiplexed, canceling, precise, enables, imaging, highly
- GSE280639 Multichrome encoding-based multiplexed, spatially resolved imaging reveals single-cell RNA epigenetic modifications heterogeneity 21 samples shares multiplexed, imaging
- GSE289345 Highly multiplexed mRNA quantitation with CRISPR-Cas13 18 samples shares multiplexed, highly
- GSE90546 A multiplexed single-cell CRISPR screening platform enables systematic dissection of the unfolded protein response 17 samples shares multiplexed, enables
- GSE269596 Multiplexed single-cell characterization of alternative polyadenylation regulators (scRNA-Seq) 12 samples shares multiplexed, rna-seq
- GSE248085 Precise editing of pathogenic nucleotide repeat expansion in iPSCs without inducing DNA double-strand breaks using a prime editor [RNA-Seq] 8 samples shares precise, rna-seq
- GSE247589 Enhancing Precise Genome Editing in Human Pluripotent Stem Cells through Dual Inhibition of DNA Damage Response and Repair Pathways [RNA-seq] 5 samples shares precise, rna-seq
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.