UVB exposure triggers autoimmune cutaneous inflammation in Foxp3dExon2-expressing mice.
RNA-seq (gene expression) · mouse · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Mus musculus (mouse)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE247794_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1040496 and SRA study SRP471951. Searching any of these in the dataset finder brings you back here.
The grouping that defines any comparison lives in the sample characteristics, which GEO records separately from the titles.
How we read this: Sample titles run lib95625 … lib95640 and carry no group information.
- GSM7900875 lib95625
- GSM7900876 lib95626
- GSM7900877 lib95627
- GSM7900878 lib95628
- GSM7900879 lib95629
- GSM7900880 lib95630
- GSM7900881 lib95633
- GSM7900882 lib95634
- GSM7900883 lib95635
- GSM7900884 lib95638
- GSM7900885 lib95639
- GSM7900886 lib95640
- GSE286079 Epicutaneous Staphylococcus aureus exposure triggers lung inflammation via epithelia-intrinsic IL-36R signaling in a murine model of the atopic march 25 samples shares cutaneous, exposure, triggers
- GSE215004 Autoimmune inflammation triggers an HSC-derived trained immunity program in myeloid cells 54 samples shares autoimmune, triggers
- GSE298951 Autoimmune antibody-induced neuronal hyperactivity triggers pathological Tau in IgLON5 disease 27 samples shares autoimmune, triggers
- GSE319517 Growth of subcutaneous MC38 colorectal cancer triggers mild cachexia 8 samples shares cutaneous, triggers
- GSE264280 Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 (RNA-seq) 30 samples shares uvb
- GSE286963 C/EBPβ suppresses keratinocyte autonomous type 1 IFN response and p53 to increase cell survival and susceptibility to UVB-induced skin cancer 16 samples shares uvb
- GSE331027 Hmga2-dependent cAMP signaling drives UVB-induced melanocyte stem cell activation 9 samples shares uvb
- GSE252308 Paraventricular hypothalamic RUVBL2 neurons suppress appetite by enhancing excitatory synaptic transmission in distinct neurocircuits [RNA-seq] 6 samples shares uvb
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.