Single-nucleus RNA-sequencing of human subcutaneous adipose tissue biopsies from 84 Finnish participants.
Single-nucleus RNA-seq · human · 84 samples
- What it is
- Single-nucleus RNA-seqGene activity measured in individual nuclei (used when whole cells are hard to isolate, for example from frozen tissue).
- Organism
- Homo sapiens (human)
- Samples
- 84 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE249089_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1047144. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 84 more — browse all 84 samples with per-sample file links →
- GSE302701 Single-nucleus RNA sequencing of human subcutaneous adipose tissue biopsies from 59 Finnish participants. 59 samples shares single-nucleus, subcutaneous, participants, biopsies, adipose, finnish
- GSE316698 Single-nucleus RNA sequencing of human subcutaneous adipose tissue biopsies from 49 Mexican participants 49 samples shares single-nucleus, subcutaneous, participants, biopsies, adipose
- GSE302599 Single-nucleus RNA sequencing of human visceral adipose tissue biopsies from 63 Italian participants. 63 samples shares single-nucleus, participants, biopsies, adipose
- GSE310542 A single-nucleus dataset sampling subcutaneous white adipose from living donors to study familial partial lipodystrophy 2 30 samples shares single-nucleus, subcutaneous, adipose
- GSE303983 Molecular responses in abdominal subcutaneous adipose tissue after a session of endurance exercise: effects of exercise intensity 90 samples shares subcutaneous, adipose
- GSE245948 A dynamic subcutaneous adipose transcriptome of human insulin resistance identifies a molecular predisposition shared with visceral adipose tissue 76 samples shares subcutaneous, adipose
- GSE308103 Single-nucleus RNA-sequencing (snRNA-seq) analysis of normal lung tissues, precursor lung lesions and invasive lung adenocarcinomas 75 samples shares single-nucleus, rna-sequencing
- GSE306796 Human Subcutaneous ABD/GLU/Thi adipose tissue RNAseq - NYC sample 32 samples shares subcutaneous, adipose
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.