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CAG repeat-selective compunds reduce abundance of expanded CAG RNAs in patient and murine models of SCAs I

GSE249555 Homo sapiens Expression profiling by high throughput sequencing 9 samples Submitted 2025/12/04 Platform GPL18573
Summary
Spinocerebellar ataxias (SCAs) are a genetically heterogenous group of >40 devastating neurodegenerative conditions for which clinical care currently focuses on managing symptoms. Across these diseases there is a large unmet need for therapies that address underlying disease mechanisms. In this study, we utilised the shared CAG repeat expansion mutation causative for a large subgroup of SCAs, to develop a novel disease-independent and mechanism agnostic small molecule screening approach to identify compounds with therapeutic potential across CAG SCAs. Using this screening approach, we identified the FDA approved microtubule inhibitor Colchicine and a novel CAG-repeat binding compound that reduce expression of disease associated transcripts across SCA1, 3 and 7 patient derived fibroblast lines and the Atxn1154Q/2Q SCA1 mouse model in a repeat selective manner. Furthermore, we demonstrate that our lead candidate rescues dysregulated alternative splicing in Atxn1154Q/2Q mice. This work provides the first example of small molecules capable of targeting the underlying mechanism of disease across multiple CAG SCAs.
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Direct links to NCBI, no account and no request form: the whole study as GSE249555_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 9 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1049476 and SRA study SRP476287. Searching any of these in the dataset finder brings you back here.

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