TWEAK/Fn14 signalling in Breast Cancer (HER2 H3K27ac ChIP-seq)
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 10 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 10 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- TWEAK/Fn14 signalling driven super-enhancer reprogramming promotes pro-metastatic metabolic rewiring in triple-negative breast cancerNature communications · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE251868_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1055579 and SRA study SRP479506. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 10 more — browse all 10 samples with per-sample file links →
- GSE251866 TWEAK/Fn14 signalling in Breast Cancer (Fn14 KO TNBC H3K27ac ChIP-seq) 16 samples shares h3k27ac, tweak, fn14, chip-seq, breast
- GSE251867 TWEAK/Fn14 signalling in Breast Cancer (MAFG ChIP-seq) 16 samples shares tweak, fn14, chip-seq, breast
- GSE231479 TWEAK/Fn14 signalling in Breast Cancer [cell line K27 ChIP] 24 samples shares tweak, fn14, breast
- GSE231482 TWEAK/Fn14 signalling in Breast Cancer [patient K27 ChIP] 24 samples shares tweak, fn14, breast
- GSE231477 TWEAK/Fn14 signalling in Breast Cancer [cell line ATAC-seq] 14 samples shares tweak, fn14, breast
- GSE231483 TWEAK/Fn14 signalling in Breast Cancer 64 samples shares tweak, fn14, breast
- GSE231480 TWEAK/Fn14 signalling in Breast Cancer [cell line RNA-seq] 24 samples shares tweak, fn14, breast
- GSE251869 TWEAK/Fn14 signalling in Breast Cancer (RNA-Seq) 12 samples shares tweak, fn14, breast
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.