BI Human Reference Epigenome Mapping Project: Characterization of DNA methylation by RRBS in human subject
DNA methylation · human · 55 samples
- What it is
- DNA methylationChemical marks on DNA that help switch genes on or off.
- Organism
- Homo sapiens (human)
- Samples
- 55 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE25247_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for beta-value tables or raw IDAT files among the supplementary files.
Also filed as BioProject PRJNA34535 and SRA study SRP004244. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 55 more — browse all 55 samples with per-sample file links →
- GSE74193 Mapping DNA methylation across development, genotype, and schizophrenia in the human frontal cortex 675 samples shares methylation, mapping
- GSE72680 DNA Methylation of African Americans from the Grady Trauma Project 422 samples shares methylation, project
- GSE67751 Blood Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects 92 samples shares methylation, subject
- GSE284289 Removal of promoter DNA methylation by epigenome editing reverses HBG silencing [RNA-seq] 40 samples shares methylation, epigenome
- GSE254366 Epigenome reprogramming through H3K27 and H3K4 trimethylation as a resistance mechanism to DNA methylation inhibition in BRAFV600E-mutated CRC. 36 samples shares methylation, epigenome
- GSE216650 Human Tumor Atlas Pilot Project (HTAPP) neuroblastoma methylation array datasets 35 samples shares methylation, project
- GSE67749 Frontal lobe (brain) Illumina Inf 450 DNA methylation samples from HIV+ and HIV- human subjects 33 samples shares methylation, subject
- GSE319444 DNA methylation stochasticity is linked to transcriptional variability and identifies convergent epigenetic disruption across genetically-defined subtypes of AML [PrimaryAML_WGBS] 20 samples shares methylation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.