Pervasive off-target activity in CRISPR-interference (CRISPRi) system [ChIP-seq]

Direct links to NCBI, no account and no request form: the whole study as GSE252978_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1063362 and SRA study SRP483076. Searching any of these in the dataset finder brings you back here.

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• GSE296831 Epigenetic Context Defines the Transcriptional Activity of Canonical and Noncanonical NF-kappaB Signaling in Pancreatic Cancer [ChIP-Seq] 48 samples
• GSE215328 Pivotal Role of the NuRD Complex in Remodeling Chromatin Environment and Maintaining Genome Architecture at CTCF Sites [hESC_H9_d049_ChIP_Seq] 135 samples
• GSE284519 TRIM33 loss reduces Androgen Receptor transcriptional output and H2BK120 ubiquitination [ChIP-seq] 93 samples
• GSE296190 Hypoxic regulation of chromatin and gene transcription [ChIP-seq] 84 samples
• GSE294235 Rheumatoid Arthritis circulating CD14+ monocytes are epigenetically primed [ChIP-seq] 75 samples
• GSE335058 Evolutionary guided transcription factor design programs novel T cell states [ChIP-Seq] 66 samples
• GSE263716 Epigenetic Analysis of SLE Disease Activity in Resting Naive (rN) and Transitional (T1T2) B cells 62 samples
• GSE293334 Allelic topological centering by transcription factors drives oncogenic multi-enhancer transcriptional regulation [ChIP-seq] 60 samples

Search all human ChIP / ATAC / CUT&Tag datasets in GEO →