← BioTransfer GEO Dataset Finder
GEO series

CUT&Tag-seq Assays in Healthy and Cancerous Liver Cells

GSE255640 Homo sapiens Genome binding/occupancy profiling by high throughput sequencing 4 samples Submitted 2024/05/31 Platform GPL24676
Summary
We performed CUT&Tag-seq assays for KDM1A using the healthy liver cell lines (THLE2, THLE3) and HCC cell lines (HepG2, Huh7).
Published in
Transposable elements-mediated recruitment of KDM1A epigenetically silences HNF4A expression to promote hepatocellular carcinoma
Jing T, Wei D, Xu X et al. · Nature communications 2024 · PMID 38965210 · doi:10.1038/s41467-024-49926-2
This dataset
Download

Direct links to NCBI, no account and no request form: the whole study as GSE255640_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 4 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1075814 and SRA study SRP489430. Searching any of these in the dataset finder brings you back here.

Samples in this study

The sample list for this study is not cached yet. Press Sort into groups and it will be fetched from NCBI.

+ 4 more — browse all 4 samples with per-sample file links →

Similar datasets

Search all human ChIP / ATAC / CUT&Tag datasets in GEO →

Share this dataset

Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.