5-Fluorouracil Treatment Represses Pseudouridine-Containing miRNA Export into Extracellular Vesicles
Non-coding RNA profiling · human · 18 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Homo sapiens (human)
- Samples
- 18 samples: 6 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- 5-Fluorouracil treatment represses pseudouridine-containing miRNA export into extracellular vesiclesJournal of extracellular biology · 2024
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE255877_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1076882 and SRA study SRP490078. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 18 samples.
How we read this: 6 replicated groups read from 18 sample titles; they account for 18 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8082143 SF_1 SF
- GSM8082144 SF_2 SF
- GSM8082145 SF_3 SF
- GSM8082146 FiveFU_1 FiveFU
- GSM8082147 FiveFU_2 FiveFU
- GSM8082148 FiveFU_3 FiveFU
- GSM8082149 small RNA SF_1 small RNA SF
- GSM8082150 small RNA SF_2 small RNA SF
- GSM8082151 small RNA SF_3 small RNA SF
- GSM8082152 small RNA FiveFU_1 small RNA FiveFU
- GSM8082153 small RNA FiveFU_2 small RNA FiveFU
- GSM8082154 small RNA FiveFU_3 small RNA FiveFU
- GSM8082155 small RNA SFEV_1 small RNA SFEV
- GSM8082156 small RNA SFEV_2 small RNA SFEV
- GSM8082157 small RNA SFEV_3 small RNA SFEV
- GSM8082158 small RNA FiveFUEV_1 small RNA FiveFUEV
- GSM8082159 small RNA FiveFUEV_2 small RNA FiveFUEV
- GSM8082160 small RNA FiveFUEV_3 small RNA FiveFUEV
- GSE297395 Extracellular vesicles and their RNA cargo facilitate bidirectional cross-kingdom communication between human and bacterial cells [RNA-Seq] 105 samples shares extracellular, vesicles
- GSE302211 Extracellular Vesicle Online Knowledge Explorer (EVOKE) - A guiding tool for the selection of methods to prepare extracellular vesicles from human biofluids II 73 samples shares extracellular, vesicles
- GSE314750 Increased arrhythmic risk in obesity is transduced by adipose tissue-derived extracellular vesicles 30 samples shares extracellular, vesicles
- GSE181537 RNA-Seq profiling of circular RNAs in human colorectal cancer 5-fluorouracil resistance and the potential biomarkers 12 samples shares 5-fluorouracil
- GSE256353 Upregulated cholesterol biosynthesis facilitates the survival of methylation-retaining AML cells following decitabine treatment [single_colony_TEM-Seq] 1728 samples shares treatment
- GSE283522 The spatially informed mFISHseq assay resolves biomarker discordance and predicts treatment response in breast cancer 1254 samples shares treatment
- GSE319641 RNA-Seq profiling of pre- and on-treatment tumor samples from breast cancer patients enrolled in the NeoTRIP trial. 401 samples shares treatment
- GSE222196 Treatment of prostate cancer cell lines with Androgen Receptor and Receptor Tyrosine Kinase inhibitors 246 samples shares treatment
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.