DNA hypomethylation promotes UHRF1- and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states
ChIP-seq / ATAC-seq (genome binding and open chromatin) · human · 77 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Homo sapiens (human)
- Samples
- 77 samples
- Data you can get
- A processed expression table (series matrix) and the array files, from NCBI.
- Paper
- DNA hypomethylation promotes UHRF1-and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin statesMolecular cell · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE256135_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1078305 and SRA study SRP490583. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 77 more — browse all 77 samples with per-sample file links →
- GSE256116 DNA hypomethylation promotes UHRF1- and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states 36 samples shares suv39h1, h3k18ub, h3k9me3, uhrf1, hypomethylation, heterochromatin, h2-dependent, crosstalk
- GSE282925 DNA hypomethylation promotes UHRF1- and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states [RNA-Seq] 12 samples shares suv39h1, h3k18ub, h3k9me3, uhrf1, hypomethylation, heterochromatin, h2-dependent, crosstalk
- GSE256114 DNA hypomethylation promotes UHRF1- and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states 12 samples shares suv39h1, h3k18ub, h3k9me3, uhrf1, hypomethylation, heterochromatin, h2-dependent, crosstalk
- GSE282924 DNA hypomethylation promotes UHRF1- and SUV39H1/H2-dependent crosstalk between H3K18ub and H3K9me3 to reinforce heterochromatin states [ChIP-Seq] 9 samples shares suv39h1, h3k18ub, h3k9me3, uhrf1, hypomethylation, heterochromatin, h2-dependent, crosstalk
- GSE285125 SUV39H1/2-mediated H3K9me3 restricts TE-induced immune response in Acute Myeloid Leukemia [RNA-Seq] 35 samples shares suv39h1, h3k9me3
- GSE285122 SUV39H1/2-mediated H3K9me3 restricts TE-induced immune response in Acute Myeloid Leukemia [ChIP-Seq] 18 samples shares suv39h1, h3k9me3
- GSE291238 SUV39H1/2-mediated H3K9me3 restricts TE-induced immune response in Acute Myeloid Leukemia (ATAC-Seq) 6 samples shares suv39h1, h3k9me3
- GSE289666 MAPK/ERK signaling regulates H3K9me3 heterochromatin reorganization to confer mesendoderm developmental competence 52 samples shares h3k9me3, heterochromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.