Conserved helical motifs in the Ikaros IDR mediate NuRD corepressor interaction and transcriptional repression.
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 72 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 72 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Conserved helical motifs in the IKZF1 disordered region mediate NuRD interaction and transcriptional repressionBlood · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE256299_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1078887 and SRA study SRP490869. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 72 more — browse all 72 samples with per-sample file links →
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- GSE315069 Smad4-p65 interactions drive BMP-mediated protection against inflammatory cell death [RNA-Seq] 12 samples shares interaction, mediate
- GSE315066 Smad4-p65 interactions drive BMP-mediated protection against inflammatory cell death [4C-Seq] 12 samples shares interaction, mediate
- GSE315062 Smad4-p65 interactions drive BMP-mediated protection against inflammatory cell death [ChIP-Seq] 10 samples shares interaction, mediate
- GSE149674 Dynamic Foxp3-chromatin interaction controls tunable Treg cell function 94 samples shares interaction
- GSE239952 Physical and functional interaction among Irf8 enhancers during dendritic cell differentiation 89 samples shares interaction
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.