Spatially tuneable multi-omics sequencing using light-driven combinatorial barcoding of molecules in tissues
ChIP-seq / ATAC-seq (genome binding and open chromatin) · mouse · 17 samples
- What it is
- ChIP-seq / ATAC-seq (genome binding and open chromatin)Where proteins bind the genome, or which regions are open and active.
- Organism
- Mus musculus (mouse)
- Samples
- 17 samples: 5 conditions, mostly in triplicateGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- Spatially tunable multiomic sequencing using light-driven combinatorial barcoding of molecules in tissuesProceedings of the National Academy of Sciences of the United States of America · 2026
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE260699_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Look for peak files (.bed, .narrowPeak) and signal tracks (.bigWig) among the supplementary files; the raw reads are on ENA.
Also filed as BioProject PRJNA1082677. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 14 samples.
How we read this: 5 replicated groups read from 17 sample titles; they account for 14 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8122639 BALI_DNA_DG_vs_CTX_adult_rep1 BALI_DNA_DG_vs_CTX_adult
- GSM8122640 BALI_DNA_DG_vs_CTX_adult_rep2 BALI_DNA_DG_vs_CTX_adult
- GSM8122741 BALI_multiomic_DNA_DG_vs_CA1_adult_rep1 BALI_multiomic_DNA_DG_v…
- GSM8122742 BALI_multiomic_DNA_DG_vs_CA1_adult_rep2 BALI_multiomic_DNA_DG_v…
- GSM8122743 BALI_multiomic_DNA_DG_vs_CA1_adult_rep3 BALI_multiomic_DNA_DG_v…
- GSM8122744 BALI_multiomic_RNA_DG_vs_CA1_adult_rep1 BALI_multiomic_RNA_DG_v…
- GSM8122745 BALI_multiomic_RNA_DG_vs_CA1_adult_rep2 BALI_multiomic_RNA_DG_v…
- GSM8122746 BALI_multiomic_RNA_DG_vs_CA1_adult_rep3 BALI_multiomic_RNA_DG_v…
- GSM8122747 BALI_RNA_SVZ_vs_CTX_e165
- GSM8122748 overhang_screen_6mer_rep1 overhang_screen_6mer
- GSM8122749 overhang_screen_6mer_rep2 overhang_screen_6mer
- GSM8122750 overhang_screen_6mer_rep3 overhang_screen_6mer
- GSM8122751 overhang_screen_7mer_rep1 overhang_screen_7mer
- GSM8122752 overhang_screen_7mer_rep2 overhang_screen_7mer
- GSM8122753 overhang_screen_7mer_rep3 overhang_screen_7mer
- GSM8122768 LCM_RNA_SVZ
- GSM8122769 LCM_RNA_CTX
No close match found for this topic, so these are simply the most-viewed datasets of the same kind.
- GSE241708 Genomic context sensitizes regulatory elements to genetic disruption 154 samples
- GSE237089 Non-CG DNA methylation and MeCP2 stabilize repeated tuning of long genes that distinguish closely related neuron types. 108 samples
- GSE273615 In vivo armed macrophages curb liver metastasis through tumor reactive T cell rejuvenation 36 samples
- GSE314329 Inflammatory Monocytes Constrain YAP-Induced Cell Proliferation 34 samples
- GSE266690 Single cell approaches define neural stem cell niches and identify microglial ligands that enhance precursor-mediated remyelination 33 samples
- GSE102346 Regulation of m6A transcripts by the 3ʹ→5ʹ RNA helicase YTHDC2 is essential for a successful meiotic program in the mammalian germline 32 samples
- GSE60615 miRNAs in Treg-derived Exosomes 24 samples
- GSE274621 Single cell transcriptomes and spatial architecture of pancreatic pre-invasive lesions reveal acinar metaplastic cells' heterogeneity 2 samples
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.