AMPK activation in response to hepatitis E virus infection inhibited viral replication by attenuating autophagosome and promoting innate immunity
RNA-seq (gene expression) · human · 15 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 15 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE262469_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1091941 and SRA study SRP497878. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 15 more — browse all 15 samples with per-sample file links →
- GSE313107 AMPK agonism optimizes the in vivo activation and anti-leukemia efficacy of chimeric antigen receptor T cells 12 samples shares ampk, activation
- GSE223925 AMPK-beta1 Activation Induces Fetal Hemoglobin 12 samples shares ampk, activation
- GSE292032 Receptor transport protein 4 (RTP4)-mediated repression of hepatitis C virus replication in mouse cells 96 samples shares replication, hepatitis
- GSE322526 PI3K-AKT activation determines oncogenic RAS-induced hypertranscription and replication stress 30 samples shares replication, activation
- GSE290015 Amniotic Fluid Reduces Liver Fibrosis By Attenuating Hepatic Stellate Cell Activation 21 samples shares attenuating, activation
- GSE322525 PI3K-AKT activation determines oncogenic RAS-induced hypertranscription and replication stress [RNASeq] 18 samples shares replication, activation
- GSE250616 Cannabinoid Receptor 2 Agonists Attenuate HIV Replication and Inflammatory Activation in HIV-infected Myeloid Cells 16 samples shares replication, activation
- GSE322524 PI3K-AKT activation determines oncogenic RAS-induced hypertranscription and replication stress [ChrRNAseq] 12 samples shares replication, activation
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.