Transcriptome profiling of cartilage progenitor cells over-expressing miR-138 or miR-181a/b-1 during chondrogenic induction
RNA-seq (gene expression) · human · 12 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 12 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- MicroRNA-181a/b-1 enhances chondroprogenitor anabolism and downregulates aquaporin-9Osteoarthritis and cartilage open · 2025
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE262978_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1095370 and SRA study SRP499191. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 12 more — browse all 12 samples with per-sample file links →
- GSE35546 A Chondrogenic Molecule that Repairs Cartilage by Transcriptional Regulation of CBF-beta 7 samples shares chondrogenic, cartilage
- GSE282027 Multi-omics analyses integration reveals a novel TRF2-miR-181a-5p-S100A10 regulatory axis in colon cancer [RNA-seq] 6 samples shares mir-181a
- GSE282029 Multi-omics analyses integration reveals a novel TRF2-miR-181a-5p-S100A10 regulatory axis in colon cancer. 8 samples shares mir-181a
- GSE282028 Multi-omics analyses integration reveals a novel TRF2-miR-181a-5p-S100A10 regulatory axis in colon cancer [ChIP-seq] 2 samples shares mir-181a
- GSE329742 Mechano-Hypoxia Programs a Coordinated Chondrogenic–Osteochondral Transcriptome in Co-Cultures of Human Nasal Chondrocytes and Bone Marrow–Derived Mesenchymal Stromal Cells 7 samples shares chondrogenic
- GSE288136 The 9p21.3 coronary artery disease risk locus drives vascular smooth muscle cells to an osteochondrogenic state 8 samples shares chondrogenic
- GSE228272 Gene expression profile of MDA-MB-468 cell line over-expressing IGFBP2 gene 6 samples shares over-expressing
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.