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Deciphering age-related transcriptomic changes in mouse retinal pigment epithelium

GSE263427 Mus musculus Expression profiling by high throughput sequencing 8 samples Submitted 2024/05/10 Platform GPL24247
Summary
Aging of the retinal pigment epithelium (RPE) leads to a gradual decline in RPE homeostasis over time, significantly impacting retinal health. Understanding the mechanisms underlying RPE aging is crucial for elucidating the background in which many age-related retinal pathologies develop. In this study, we compared the transcriptomes of young and aged mouse RPE and found a marked upregulation of immunogenic and proinflammatory genes in aging RPE. Additionally, aging RPE exhibited dysregulation of pathways associated with visual perception and extracellular matrix production. Research on aging in post-natal quiescent RPE is hindered by the absence of relevant in vitro models. We evaluated an in vitro model of chronologically aged primary human RPE to address this gap, which displayed gene expression patterns comparable to native-aged RPE. Profiling this in vitro aging model highlighted its potential utility in investigating cellular and molecular mechanisms of RPE aging and in preliminary testing of therapeutic compounds. Overall, our findings suggest chronological aging of RPE leads to the acquisition of a proinflammatory phenotype, impacting RPE function and serving as a significant factor in the development of age-related retinal pathologies.
Published in
Deciphering age-related transcriptomic changes in the mouse retinal pigment epithelium
Dubey SK, Dubey R, Jung K et al. · Aging 2025 · PMID 40042930 · doi:10.18632/aging.206219
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Direct links to NCBI, no account and no request form: the whole study as GSE263427_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1097520 and SRA study SRP500285. Searching any of these in the dataset finder brings you back here.

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