Effects of intrauterine hyperglycemia on offspring development in gestational diabetes mellitus based on placental transcriptomics
RNA-seq (gene expression) · human · 16 samples
- What it is
- RNA-seq (gene expression)Gene activity measured by sequencing. The summary does not mention single-cell work, so this is most likely bulk: one average per sample, the usual starting point for comparing groups.
- Organism
- Homo sapiens (human)
- Samples
- 16 samples: 8 × Ctrl-AGA vs 8 × GDM-AGAGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE263483_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: For RNA-seq the counts are usually a table among the supplementary files (look for 'counts', 'expression', 'FPKM' or 'TPM' in the file name). The series matrix of a sequencing study is sometimes nearly empty.
Also filed as BioProject PRJNA1097628 and SRA study SRP500323. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 16 samples.
How we read this: 2 replicated groups read from 16 sample titles; they account for 16 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8193378 Ctrl-AGA-2 Ctrl-AGA
- GSM8193379 Ctrl-AGA-3 Ctrl-AGA
- GSM8193380 Ctrl-AGA-7 Ctrl-AGA
- GSM8193381 Ctrl-AGA-8 Ctrl-AGA
- GSM8193382 Ctrl-AGA-9 Ctrl-AGA
- GSM8193383 Ctrl-AGA-12 Ctrl-AGA
- GSM8193384 Ctrl-AGA-13 Ctrl-AGA
- GSM8193385 Ctrl-AGA-14 Ctrl-AGA
- GSM8193386 GDM-AGA-5 GDM-AGA
- GSM8193387 GDM-AGA-6 GDM-AGA
- GSM8193388 GDM-AGA-8 GDM-AGA
- GSM8193389 GDM-AGA-11 GDM-AGA
- GSM8193390 GDM-AGA-17 GDM-AGA
- GSM8193391 GDM-AGA-19 GDM-AGA
- GSM8193392 GDM-AGA-22 GDM-AGA
- GSM8193393 GDM-AGA-27 GDM-AGA
- GSE237061 Transcriptomic profiling of human placenta in gestational diabetes mellitus 22 samples shares gestational, diabetes, mellitus
- GSE284329 Multi-Omics Profiling Reveals Distinct Lipidomic and Transcriptomic Alterations in Gestational Diabetes Mellitus, Preeclampsia, and Coexistence of Both: Implications for Maternal and Neonatal Outcomes 17 samples shares gestational, diabetes, mellitus
- GSE297755 RNA-seq data from gingival crevicular fluid of pregnant women for gestational diabetes mellitus (GDM) prediction 10 samples shares gestational, diabetes, mellitus
- GSE255075 High-throughput sequencing analysis of placental tissue from pregnant women with gestational diabetes and gestational hypertension 9 samples shares gestational, placental, diabetes
- GSE267259 RNAseq between gestational diabetes mellitus and healthy control groups 8 samples shares gestational, diabetes, mellitus
- GSE234840 Placenta-derived exosomes of gestational diabetes mellitus affect cell metabolism and cell function via transferring microRNAs 8 samples shares gestational, diabetes, mellitus
- GSE280975 Single-cell transcriptomics reveals markers of regulatory T cell dysfunction in Gestational Diabetes Mellitus 33 samples shares gestational, diabetes, mellitus
- GSE274826 Hyperglycemia-triggered lipid peroxidation destabilizes STAT4 and impairs anti-viral Th1 responses in type 2 diabetes 9 samples shares hyperglycemia, diabetes
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.