ZNHIT3 Regulates Translation to Ensure Cell Lineage Differentiation in Mouse Preimplantation Development
Non-coding RNA profiling · mouse · 202 samples
- What it is
- Non-coding RNA profilingLevels of RNAs that do not code for proteins, such as miRNA or lncRNA.
- Organism
- Mus musculus (mouse)
- Samples
- 202 samples: 20 conditions, mostly with about 8 replicates eachGroups are read from the sample names, not from the paper. Check the list below.
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
- Paper
- ZNHIT3 Regulates Translation to Ensure Cell Lineage Differentiation in Mouse Preimplantation DevelopmentAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE268043_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
Also filed as BioProject PRJNA1114089 and SRA study SRP508956. Searching any of these in the dataset finder brings you back here.
Supports a between-group comparison across 202 samples.
How we read this: 20 replicated groups read from 202 sample titles; they account for 202 of them. These groups are guessed from the sample names, not taken from the paper, so check them against the sample list below before relying on them.
- GSM8283468 8C_Ctrl_1 8C_Ctrl
- GSM8283469 8C_Ctrl_2 8C_Ctrl
- GSM8283470 8C_Ctrl_3 8C_Ctrl
- GSM8283471 8C_KO_1 8C_KO
- GSM8283472 8C_KO_2 8C_KO
- GSM8283473 8C_KO_3 8C_KO
- GSM8283474 Morula_Ctrl_1 Morula_Ctrl
- GSM8283475 Morula_Ctrl_2 Morula_Ctrl
- GSM8283476 Morula_Ctrl_3 Morula_Ctrl
- GSM8283477 Morula_KO_1 Morula_KO
- GSM8283478 Morula_KO_2 Morula_KO
- GSM8283479 Morula_KO_3 Morula_KO
- GSM8283480 scRNAseq_8cell_R33_1 scRNAseq_8cell_R33
- GSM8283481 scRNAseq_8cell_R33_2 scRNAseq_8cell_R33
- GSM8283482 scRNAseq_8cell_R33_3 scRNAseq_8cell_R33
- GSM8283483 scRNAseq_8cell_R33_4 scRNAseq_8cell_R33
- GSM8283484 scRNAseq_8cell_R33_5 scRNAseq_8cell_R33
- GSM8283485 scRNAseq_8cell_R33_6 scRNAseq_8cell_R33
- GSM8283486 scRNAseq_8cell_R33_7 scRNAseq_8cell_R33
- GSM8283487 scRNAseq_8cell_R33_8 scRNAseq_8cell_R33
- GSM8283488 scRNAseq_8cell_R34_1 scRNAseq_8cell_R34
- GSM8283489 scRNAseq_8cell_R34_2 scRNAseq_8cell_R34
- GSM8283490 scRNAseq_8cell_R34_3 scRNAseq_8cell_R34
- GSM8283491 scRNAseq_8cell_R34_4 scRNAseq_8cell_R34
- GSM8283492 scRNAseq_8cell_R34_5 scRNAseq_8cell_R34
- GSM8283493 scRNAseq_8cell_R34_6 scRNAseq_8cell_R34
- GSM8283494 scRNAseq_8cell_R34_7 scRNAseq_8cell_R34
- GSM8283495 scRNAseq_8cell_R34_8 scRNAseq_8cell_R34
- GSM8283496 scRNAseq_8cell_R35_1 scRNAseq_8cell_R35
- GSM8283497 scRNAseq_8cell_R35_2 scRNAseq_8cell_R35
- GSM8283498 scRNAseq_8cell_R35_3 scRNAseq_8cell_R35
- GSM8283499 scRNAseq_8cell_R35_4 scRNAseq_8cell_R35
- GSM8283500 scRNAseq_8cell_R35_5 scRNAseq_8cell_R35
- GSM8283501 scRNAseq_8cell_R35_6 scRNAseq_8cell_R35
- GSM8283502 scRNAseq_8cell_R35_7 scRNAseq_8cell_R35
- GSM8283503 scRNAseq_8cell_R35_8 scRNAseq_8cell_R35
- GSM8283504 scRNAseq_8cell_R39_1 scRNAseq_8cell_R39
- GSM8283505 scRNAseq_8cell_R39_2 scRNAseq_8cell_R39
- GSM8283506 scRNAseq_8cell_R39_3 scRNAseq_8cell_R39
- GSM8283507 scRNAseq_8cell_R39_4 scRNAseq_8cell_R39
+ 162 more — browse all 202 samples with per-sample file links →
- GSE314859 The degradation of maternal RNA-binding protein 4E-T regulates translational activation to ensure maternal-to-zygotic transition in mouse embryos 67 samples shares translation, ensure
- GSE235109 Ensembles of genome-coverage single-cell histone modifications reveal epigenetic lineages during mouse preimplantation development 47 samples shares preimplantation, lineage
- GSE263902 The translational landscape of mouse oocytes and preimplantation embryos revealed by high-resolution ribosome profiling 272 samples shares preimplantation, translation
- GSE303981 ADNP regulates chromatin architecture and lineage fidelity during neural differentiation 31 samples shares lineage
- GSE318069 eIF4G2-mediated Translation Initiation of Histone Modifiers is Essential for Intestinal Stem Cell Maintenance and Differentiation 145 samples shares translation
- GSE215181 Selective requirement of 3D genomic organization for the Mdm1-Il22-Ifng locus regulation in initial Th1 cell lineage specification and differentiation 135 samples shares lineage
- GSE299115 R-loops shape the H2A.Z landscape and promote balanced lineage allocation during differentiation [CUT&Tag] 56 samples shares lineage
- GSE342312 T-bet and Runx3 orchestrate effector CD8 T cell differentiation and lineage fidelity through cooperative and distinct chromatin regulatory mechanisms [Multi-omics] 40 samples shares lineage
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.