ALKBH1-mediated DNA N6-methyladenine Modification Regulates H3K9me3-dependent Heterochromatin in Neural Tube Development [scRNA-Seq]
Single-cell RNA-seq · mouse · 2 samples
- What it is
- Single-cell RNA-seqGene activity measured in thousands of individual cells, so cell types can be told apart.
- Organism
- Mus musculus (mouse)
- Samples
- 2 samples
- Data you can get
- A processed table (series matrix) and supplementary files from NCBI; the raw sequencing reads from ENA. Which of these hold counts depends on the study, so check the file list.
Read the full summary ↓
Direct links to NCBI and ENA, no account and no request form. Pick by what you want to do: take the small processed table to look, the supplementary files to re-analyse, or the original raw data to start over.
Processed table
The series matrix: one table of values per sample as the submitters processed it. The smallest download, and it opens in Excel or R. Start here to see what the data look like.
Supplementary files
The count tables and other files the authors uploaded. Take only the samples you need, or the whole study as GSE268764_RAW.tar (it can run to tens of gigabytes).
Raw sequencing reads
The original FASTQ files, straight from the sequencer, held at ENA. Large, and you align them yourself, so only choose this if you need to re-process the study from scratch.
What the files usually look like: Single-cell studies usually ship their counts as 10x files (matrix.mtx, barcodes.tsv, features.tsv), an .h5 file, or an .rds / .h5ad object that Seurat or Scanpy can open. Look for those among the supplementary files.
Also filed as BioProject PRJNA1118703 and SRA study SRP511009. Searching any of these in the dataset finder brings you back here.
The sample list for this study is not cached yet. Press Load samples and it will be fetched from NCBI.
+ 2 more — browse all 2 samples with per-sample file links →
- GSE268763 ALKBH1-mediated DNA N6-methyladenine Modification Regulates H3K9me3-dependent Heterochromatin in Neural Tube Development [RNA-Seq] 8 samples shares h3k9me3-dependent, n6-methyladenine, alkbh1-mediated, heterochromatin, modification, neural, tube
- GSE268545 ALKBH1-mediated DNA N6-methyladenine Modification Regulates H3K9me3-dependent Heterochromatin in Neural Tube Development [Cut & Tag] 4 samples shares h3k9me3-dependent, n6-methyladenine, alkbh1-mediated, heterochromatin, modification, neural, tube
- GSE332968 Resf1 is required for normal placental development and configuration of trophoblast cell-specific heterochromatin [scRNA-Seq] 2 samples shares heterochromatin, scrna-seq
- GSE242385 PHF2 maintains neural progenitor genome stability by preserving pericentric heterochromatin integrity 22 samples shares heterochromatin, neural
- GSE242383 PHF2 maintains neural progenitor genome stability by preserving pericentric heterochromatin integrity (ChIP-Seq) 19 samples shares heterochromatin, neural
- GSE242384 PHF2 maintains neural progenitor genome stability by preserving pericentric heterochromatin integrity (ATAC-Seq) 3 samples shares heterochromatin, neural
- GSE287837 Forced expression of MSR repeat transcripts above a threshold limit breaks heterochromatin organization 36 samples shares heterochromatin
- GSE246828 Heterochromatin-dependent gene silencing pathways control CD4 T cell susceptibility to regulatory T cell-mediated suppression [RNAnaivetconv] 36 samples shares heterochromatin
Metadata from NCBI GEO, cached and refreshed periodically — the NCBI page above is authoritative. Downloads link straight to NCBI/ENA; nothing is proxied through BioTransfer.