Effect of hypoxia on HIF-1α binding genes in MDA231-BrM2 breast cancer brain-selective metastatic cells with ChIP-Seq.

Direct links to NCBI, no account and no request form: the whole study as GSE268802_RAW.tar, processed values as the series matrix, the supplementary file directory, and per-sample supplementary files for any of the 8 samples. Raw sequencing reads are also available from ENA.

Also filed as BioProject PRJNA1118770 and SRA study SRP511065. Searching any of these in the dataset finder brings you back here.

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• GSE259248 ZBTB7A is a modulator of KDM5-driven transcriptional networks in basal breast cancer (ChIP-Seq) 36 samples
• GSE296831 Epigenetic Context Defines the Transcriptional Activity of Canonical and Noncanonical NF-kappaB Signaling in Pancreatic Cancer [ChIP-Seq] 48 samples
• GSE337829 Integrated single-cell profiling of RNA and DNA interactomes reveals targetable chromatin architectures in cancer [ChIP-Seq] 32 samples
• GSE314776 Decoding 3D chromatin architecture reveals distinct enhancer classes underlying hierarchical gene regulation in prostate cancer [ChIP-Seq] 24 samples
• GSE291224 AF9/KLF2 gene regulatory circuit links histone lactylation to breast cancer metastasis [CUT&Tag] 22 samples
• GSE142751 Genome-wide maps of chromatin state in 142 cancer cell lines [cell line] 855 samples
• GSE280574 mChIP-seq for high-throughput epigenomic profiling reveals a decoupling of H2A.Z and H3K4me3 in cancer 576 samples

Search all human ChIP / ATAC / CUT&Tag datasets in GEO →